Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 3.0e-172 608.6 351 100.0
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.7e-162 576.2 351 90.3
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.8e-145 519.6 351 82.6
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.8e-145 519.6 351 82.6
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.8e-132 476.5 349 78.2
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.4e-131 472.2 350 76.3
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.9e-110 403.3 341 68.6
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.6e-109 400.2 350 65.1
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 4.0e-108 395.6 351 64.1
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.9e-106 389.4 350 64.0
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.4e-105 386.3 350 63.1
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 3.5e-104 382.5 353 63.2
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.3e-103 380.6 350 62.9
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.7e-103 380.2 352 62.2
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 3.9e-103 379.0 348 67.5
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 4.8e-101 372.1 350 61.4
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.1e-100 370.9 351 61.5
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 5.3e-100 368.6 358 62.0
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 6.9e-100 368.2 350 60.9
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.2e-98 363.2 350 62.0
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 2.9e-98 362.8 348 62.4
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 8.4e-98 361.3 353 61.8
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.2e-96 357.5 353 60.9
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 2.1e-96 356.7 353 61.2
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 4.6e-96 355.5 351 61.5
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 6.0e-96 355.1 336 60.4
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.0e-96 355.1 353 61.2
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.3e-95 354.0 352 58.8
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 2.3e-95 353.2 355 61.1
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.0e-95 352.8 348 64.4
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 5.1e-95 352.1 349 58.5
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.3e-94 349.4 352 58.2
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 9.6e-94 347.8 353 58.1
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 9.6e-94 347.8 353 58.1
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.3e-93 347.4 355 58.0
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 2.8e-93 346.3 353 59.8
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.8e-93 346.3 353 59.8
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 1.1e-92 344.4 347 62.2
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 3.1e-92 342.8 349 64.2
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 3.1e-92 342.8 349 64.2
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.0e-92 342.4 353 59.8
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 3.4e-91 339.3 324 63.3
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 3.4e-91 339.3 353 57.2
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.3e-90 337.4 350 59.1
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.4e-89 334.0 356 58.7
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 4.2e-89 332.4 344 57.6
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.2e-88 330.9 363 55.9
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 6.0e-88 328.6 354 57.6
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.8e-87 327.0 351 60.4
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 3.0e-87 326.2 357 56.0
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 2.5e-86 323.2 342 57.3
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.3e-85 320.9 352 57.1
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.8e-84 317.0 356 56.5
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 5.8e-83 312.0 354 57.9
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 3.8e-82 309.3 357 53.2
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 6.0e-80 302.0 376 51.9
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.0e-79 301.2 362 54.1
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.3e-79 300.8 350 53.4
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 8.7e-79 298.1 354 54.2
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.1e-78 297.7 350 57.4
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 3.3e-78 296.2 358 53.9
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 3.3e-78 296.2 355 53.2
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 4.3e-78 295.8 340 54.7
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 5.7e-78 295.4 348 53.4
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 7.4e-78 295.0 349 52.7
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 7.4e-78 295.0 376 50.8
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 8.2e-77 291.6 353 52.4
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 8.2e-77 291.6 353 52.4
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.8e-76 290.4 356 49.4
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 2.4e-76 290.0 361 52.1
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 2.4e-76 290.0 352 52.0
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.2e-75 287.7 350 51.7
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 2.0e-75 287.0 353 51.3
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 3.4e-75 286.2 354 52.3
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 3.4e-75 286.2 354 52.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 3.8e-74 282.7 340 51.8
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 5.0e-74 282.3 349 51.3
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.9e-73 280.4 390 48.2
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.9e-73 280.4 346 51.7
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 4.2e-73 279.3 351 51.6
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 3.5e-72 276.2 346 55.8
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 3.5e-72 276.2 373 50.9
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.8e-71 273.9 346 51.7
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 3.0e-71 273.1 272 61.8
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.9e-70 270.4 367 49.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 2.8e-69 266.5 360 48.1
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 6.3e-69 265.4 311 54.7
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 3.1e-68 263.1 370 46.5
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 3.4e-67 259.6 388 43.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 6.5e-66 255.4 361 47.4
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 3.2e-65 253.1 360 47.5
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 9.4e-65 251.5 377 47.5
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 5.1e-63 245.7 354 48.0
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.1e-60 238.0 349 48.1
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 2.0e-59 233.8 349 46.4
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 4.5e-59 232.6 352 45.7
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.2e-58 230.3 343 45.2
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 2.2e-58 230.3 343 48.7
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 5.0e-58 229.2 375 45.1
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 8.5e-58 228.4 349 45.6
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 2.5e-57 226.9 377 44.3
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.2e-56 224.6 302 49.3
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.2e-56 224.6 375 44.8
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 2.7e-56 223.4 368 42.7
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 4.7e-56 222.6 369 43.1
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.8e-55 220.7 361 42.9
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.5e-54 217.6 344 43.6
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 4.8e-53 212.6 345 44.9
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 4.8e-53 212.6 360 46.9
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 5.3e-52 209.1 341 47.5
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 5.3e-52 209.1 341 47.5
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 2.6e-51 206.8 338 45.3
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.7e-50 204.1 358 43.0
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 1.6e-48 197.6 349 41.8
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 2.7e-48 196.8 331 43.2
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 3.3e-46 189.9 376 43.1
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 6.3e-45 185.7 214 57.5
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.1e-44 184.9 300 43.0
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.8e-44 184.1 368 38.0
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 9.1e-44 181.8 350 43.4
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.2e-43 181.4 303 42.2
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.6e-43 181.0 277 48.0
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 3.5e-43 179.9 342 45.3
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 9.4e-41 171.8 362 40.1
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.6e-40 171.0 294 43.9
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 6.1e-40 169.1 357 41.2
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.4e-39 167.9 301 38.5
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 3.4e-38 163.3 352 39.8
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 5.0e-34 149.4 324 37.0
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 6.1e-32 142.5 321 36.8
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.9e-29 132.9 131 58.8
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 2.7e-27 127.1 200 45.0
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.7e-26 124.4 225 47.1
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.2e-24 118.2 170 44.7
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.5e-22 111.3 170 44.7
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 5.7e-22 109.4 428 30.1
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.9e-21 107.1 249 43.0
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 5.4e-20 102.8 106 54.7
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 2.8e-16 90.5 152 43.4
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 4.0e-15 86.7 346 32.7
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 2.0e-14 84.3 152 36.8
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.6e-14 84.0 151 45.0
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.3e-13 81.6 103 44.7
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 6.4e-13 79.3 127 42.5
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 4.1e-12 76.6 102 48.0
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 8.6e-10 68.9 61 59.0
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 2.5e-09 67.4 62 58.1
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 1.1e-07 62.0 402 27.9
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 4.0e-07 60.1 44 65.9
SEGI_33577 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 6.8e-07 59.3 38 68.4
Dinv36410 Davidia involucrata HOM05D004638 ORTHO05D005443 2.6e-06 57.4 52 57.7
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 4.4e-06 56.6 90 34.4
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 4.4e-06 56.6 74 43.2


User provided reference genes

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