Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 3.8e-180 634.8 337 100.0
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 3.0e-129 465.7 338 76.3
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 3.5e-125 452.2 356 72.5
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 3.4e-104 382.5 339 64.3
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 2.7e-101 372.9 343 63.0
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 4.3e-99 365.5 347 61.7
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 2.2e-95 353.2 339 60.2
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 3.2e-94 349.4 340 59.7
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 2.8e-90 336.3 338 58.0
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 2.3e-89 333.2 344 59.6
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 6.8e-89 331.6 352 57.4
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 1.2e-88 330.9 344 56.4
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 2.4e-86 323.2 341 55.4
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 2.4e-86 323.2 345 55.7
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 4.6e-85 318.9 347 55.9
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 7.8e-85 318.2 353 55.8
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.0e-84 317.8 333 54.4
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.0e-84 317.8 347 55.9
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 2.3e-84 316.6 352 56.0
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 2.3e-84 316.6 311 58.5
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 3.9e-84 315.8 349 54.7
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 8.6e-84 314.7 338 54.1
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 1.5e-83 313.9 301 60.8
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 7.3e-83 311.6 333 57.7
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 3.6e-82 309.3 340 55.0
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 2.9e-79 299.7 359 49.9
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 8.4e-79 298.1 233 67.4
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 2.4e-78 296.6 346 52.9
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 3.2e-78 296.2 346 52.9
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 7.1e-78 295.0 333 55.9
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 1.6e-77 293.9 335 56.7
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.3e-76 290.8 343 52.8
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.3e-74 284.3 356 53.9
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 2.8e-74 283.1 279 60.9
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 8.1e-74 281.6 355 53.0
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 4.0e-73 279.3 341 51.6
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 5.3e-73 278.9 351 51.3
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 9.0e-73 278.1 357 53.2
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.5e-72 277.3 348 50.6
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.9e-70 270.4 264 60.6
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.2e-70 269.2 358 53.1
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 6.6e-68 261.9 336 49.7
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 1.1e-67 261.2 264 53.8
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 1.3e-66 257.7 325 48.6
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 3.6e-66 256.1 338 49.4
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 3.6e-66 256.1 348 49.1
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.4e-65 253.4 343 48.7
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 3.1e-65 253.1 340 47.4
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 2.6e-64 250.0 345 47.0
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 2.6e-64 250.0 349 49.0
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 3.4e-64 249.6 338 47.0
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 7.6e-64 248.4 364 47.5
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.7e-63 247.3 342 47.1
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 8.4e-63 245.0 344 48.0
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 4.2e-62 242.7 333 45.9
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 9.3e-62 241.5 344 45.6
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 8.7e-60 235.0 325 47.4
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 8.7e-60 235.0 327 47.1
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 8.7e-60 235.0 340 45.0
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 1.1e-59 234.6 327 47.1
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 9.6e-59 231.5 335 46.9
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 9.6e-59 231.5 341 44.9
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.3e-58 231.1 344 45.9
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 1.3e-58 231.1 342 45.3
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.6e-58 230.7 338 47.6
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 1.6e-58 230.7 344 46.5
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 6.2e-58 228.8 344 44.5
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 8.1e-58 228.4 339 44.2
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 8.1e-58 228.4 351 45.3
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.1e-57 228.0 353 42.8
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.1e-57 228.0 329 45.3
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 4.0e-57 226.1 350 42.3
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 9.0e-57 224.9 344 45.1
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 1.5e-56 224.2 340 44.4
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 2.0e-56 223.8 339 44.2
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 2.0e-56 223.8 272 51.8
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 2.6e-56 223.4 335 43.3
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 4.5e-56 222.6 355 45.4
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 5.8e-56 222.2 349 46.1
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.7e-55 220.7 351 43.9
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 2.9e-55 219.9 341 45.7
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.2e-53 214.5 357 44.0
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.6e-53 214.2 340 43.5
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.3e-52 210.3 363 40.8
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 3.0e-52 209.9 350 44.0
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 1.5e-51 207.6 337 42.7
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 6.3e-50 202.2 312 45.5
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.1e-49 201.4 350 44.0
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 1.4e-49 201.1 350 43.1
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.8e-49 200.7 350 43.7
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 3.1e-49 199.9 346 42.5
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 5.3e-49 199.1 335 44.2
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 6.9e-49 198.7 342 41.5
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 6.9e-49 198.7 348 42.2
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 9.0e-49 198.4 340 41.2
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.5e-48 197.6 345 42.0
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 2.0e-48 197.2 348 41.7
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 5.9e-48 195.7 312 45.2
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 7.6e-48 195.3 346 42.2
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 7.6e-48 195.3 363 40.5
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 2.2e-47 193.7 271 45.4
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 1.1e-46 191.4 346 41.6
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 1.4e-46 191.0 273 44.7
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 2.7e-45 186.8 344 40.1
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 2.7e-45 186.8 336 41.4
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.5e-45 186.4 264 45.5
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 6.1e-45 185.7 340 40.0
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 6.7e-44 182.2 235 51.1
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 1.1e-43 181.4 332 37.3
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.5e-43 181.0 250 46.0
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 2.5e-43 180.3 307 41.0
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 1.3e-42 177.9 239 49.0
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 1.6e-42 177.6 339 39.5
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 6.3e-42 175.6 312 40.1
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 1.1e-41 174.9 432 34.5
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 1.4e-41 174.5 218 50.0
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 2.4e-41 173.7 301 40.2
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 3.1e-41 173.3 217 49.8
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 3.1e-41 173.3 304 41.1
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.1e-41 173.3 341 39.0
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 4.1e-41 172.9 338 38.8
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 9.0e-41 171.8 304 41.4
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.2e-40 171.4 341 37.8
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 2.0e-40 170.6 334 38.0
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 7.7e-40 168.7 251 43.0
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.2e-39 167.2 313 40.9
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 3.8e-39 166.4 236 46.6
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 5.0e-39 166.0 308 42.2
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 1.9e-38 164.1 198 48.5
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.6e-37 161.0 347 38.3
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 8.8e-36 155.2 264 42.0
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.1e-35 154.8 311 39.9
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 2.0e-35 154.1 347 37.5
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 9.7e-35 151.8 331 39.9
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 9.7e-35 151.8 291 37.5
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 4.1e-33 146.4 267 42.3
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 2.0e-32 144.1 247 40.1
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 7.2e-30 135.6 309 36.9
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 7.2e-30 135.6 355 36.9
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 3.6e-29 133.3 297 36.7
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 3.9e-28 129.8 297 36.0
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 1.8e-25 120.9 215 40.9
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 5.3e-25 119.4 163 45.4
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 6.5e-23 112.5 257 33.9
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 1.6e-21 107.8 318 34.3
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.0e-20 105.1 120 54.2
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 2.3e-20 104.0 220 37.3
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 7.5e-19 99.0 124 47.6
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.8e-18 97.1 269 32.0
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.1e-17 95.1 331 31.1
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 2.2e-15 87.4 102 50.0
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.1e-13 80.9 234 29.1
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.4e-12 78.2 240 29.2
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.2e-08 65.1 166 34.9
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 5.9e-08 62.8 55 50.9
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 6.5e-07 59.3 105 42.9
C05p48430 Brassica napus HOM05D002346 ORTHO05D002452 1.1e-06 58.5 139 33.8
BcaC05g28742 Brassica carinata HOM05D002346 ORTHO05D002452 1.9e-06 57.8 139 33.1
BcaB06g25850 Brassica carinata HOM05D002346 ORTHO05D002452 2.5e-06 57.4 139 31.7
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 3.2e-06 57.0 135 36.3
A05p31930 Brassica napus HOM05D002346 ORTHO05D002452 5.5e-06 56.2 139 30.2
GSVIVG01011679001 Vitis vinifera HOM05D002346 ORTHO05D002452 7.2e-06 55.8 62 50.0
EL10Ac3g06510 Beta vulgaris HOM05D004643 ORTHO05D005535 9.5e-06 55.5 65 47.7
MELO3C024336.2 Cucumis melo HOM05D001047 ORTHO05D000768 9.5e-06 55.5 144 34.0
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 9.5e-06 55.5 37 62.2
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 9.5e-06 55.5 37 62.2


User provided reference genes

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