Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.5e-184 648.7 335 100.0
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 8.6e-177 623.6 335 96.1
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.0e-149 532.7 299 86.3
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.2e-146 523.5 332 78.9
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 1.5e-144 516.5 339 79.9
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.7e-138 495.7 339 73.7
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 3.7e-135 485.3 339 73.5
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 8.2e-135 484.2 297 78.5
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 8.2e-135 484.2 335 71.9
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 2.4e-134 482.6 297 78.5
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 9.1e-134 480.7 318 73.9
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 9.1e-134 480.7 292 78.4
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 2.0e-133 479.6 296 76.4
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 5.9e-133 478.0 296 76.0
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 7.7e-133 477.6 296 77.4
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.0e-132 477.2 304 73.7
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.3e-132 476.9 327 70.9
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.2e-132 476.1 296 76.7
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 3.8e-132 475.3 332 70.8
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 3.8e-132 475.3 332 70.8
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 3.8e-132 475.3 302 73.8
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 5.0e-132 474.9 296 76.7
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 8.5e-132 474.2 304 74.3
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 4.2e-131 471.9 332 69.6
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 7.2e-131 471.1 292 76.0
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 7.2e-131 471.1 293 77.5
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 6.1e-130 468.0 300 74.3
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 7.9e-130 467.6 292 75.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.0e-129 465.7 296 76.4
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 3.9e-129 465.3 296 77.4
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 3.9e-129 465.3 298 73.8
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 5.1e-129 464.9 305 75.1
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 8.8e-129 464.2 333 69.7
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-128 463.8 336 71.4
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 2.0e-128 463.0 295 76.3
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 2.6e-128 462.6 334 69.5
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 3.3e-128 462.2 331 70.7
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 7.4e-128 461.1 297 75.8
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 7.4e-128 461.1 331 69.8
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.7e-127 459.9 292 74.0
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.2e-127 459.5 329 69.3
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.7e-127 458.8 292 73.6
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.7e-127 458.8 292 73.6
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 8.2e-127 457.6 301 73.4
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.8e-126 456.4 331 70.7
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 3.1e-126 455.7 296 71.6
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 3.1e-126 455.7 339 65.2
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 5.3e-126 454.9 292 74.3
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 6.9e-126 454.5 329 68.7
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.5e-125 453.4 335 68.7
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.5e-125 453.4 335 68.7
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.5e-125 451.8 330 67.0
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 7.7e-125 451.1 313 71.2
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.0e-124 450.7 290 75.9
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 1.7e-124 449.9 292 73.6
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 2.2e-124 449.5 290 76.2
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 2.2e-124 449.5 302 71.9
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 5.0e-124 448.4 295 73.2
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.4e-123 446.8 290 74.8
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.9e-123 446.4 337 66.5
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 4.2e-123 445.3 338 68.0
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 7.2e-123 444.5 335 67.8
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 7.2e-123 444.5 295 74.6
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.2e-122 443.7 347 65.4
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 7.9e-122 441.0 302 70.5
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.9e-122 441.0 294 72.4
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 7.9e-122 441.0 301 71.1
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.0e-121 440.7 386 61.1
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 3.0e-121 439.1 302 72.8
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 6.7e-121 438.0 301 70.1
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 8.8e-121 437.6 304 69.4
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 2.0e-120 436.4 294 71.8
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 2.0e-120 436.4 306 69.0
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 2.0e-120 436.4 306 69.0
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 3.3e-120 435.6 341 66.6
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 3.3e-120 435.6 339 64.6
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 9.7e-120 434.1 295 71.5
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 9.7e-120 434.1 297 71.0
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 2.2e-119 433.0 303 70.0
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 2.8e-119 432.6 296 71.3
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 6.3e-119 431.4 340 65.3
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 8.2e-119 431.0 296 69.6
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 8.2e-119 431.0 341 64.8
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.4e-118 430.3 308 68.2
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.1e-118 428.7 291 70.4
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.1e-118 428.7 291 70.4
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 4.1e-118 428.7 336 64.0
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 9.1e-118 427.6 297 69.7
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 2.0e-117 426.4 293 70.0
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 3.5e-117 425.6 330 63.6
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.5e-117 425.2 291 69.8
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.7e-116 423.3 304 66.8
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.0e-116 421.8 290 72.8
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 2.5e-115 419.5 299 68.9
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 4.7e-114 415.2 287 70.4
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 8.0e-114 414.5 294 68.0
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.4e-113 413.7 305 66.6
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 3.3e-112 409.1 333 60.1
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.4e-112 408.7 298 67.4
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 9.7e-112 407.5 296 68.9
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.2e-111 406.4 328 63.1
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 8.2e-111 404.4 271 71.6
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.9e-109 398.3 285 69.5
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 4.2e-107 392.1 301 62.1
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.5e-107 391.7 337 64.4
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.2e-106 390.6 337 64.7
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.1e-106 389.8 296 66.2
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.7e-106 388.7 293 66.2
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 7.5e-104 381.3 341 59.8
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.3e-103 380.6 301 62.8
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.8e-102 376.7 339 56.0
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 5.2e-97 358.6 286 60.1
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 4.4e-96 355.5 291 60.1
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 9.2e-94 347.8 305 56.4
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.3e-92 344.0 291 60.8
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.3e-92 343.2 272 63.2
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.5e-88 330.5 258 62.0
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 2.6e-88 329.7 304 59.2
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.9e-83 313.5 313 53.0
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 2.1e-82 310.1 260 65.0
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.4e-78 295.4 196 74.5
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 7.8e-77 291.6 383 43.1
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.7e-76 290.4 291 48.8
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 6.8e-73 278.5 296 46.6
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 7.5e-72 275.0 308 51.9
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.4e-71 271.9 198 70.7
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.4e-70 270.8 288 45.8
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.3e-68 264.2 293 46.4
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 8.1e-66 255.0 159 75.5
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.5e-64 250.8 258 49.2
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 4.3e-59 232.6 170 64.7
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 6.0e-53 212.2 222 50.0
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 7.4e-43 178.7 279 36.9
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 3.8e-39 166.4 84 90.5
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.9e-38 164.1 118 62.7
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 4.0e-33 146.4 114 66.7
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 3.4e-32 143.3 99 70.7
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.2e-29 134.8 133 49.6
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.6e-29 134.4 73 84.9
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.6e-26 124.4 68 82.4
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 2.2e-26 124.0 76 76.3
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 1.8e-25 120.9 108 52.8
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 1.8e-25 120.9 108 52.8
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 3.2e-22 110.2 174 39.7
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 5.5e-22 109.4 87 57.5
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 1.8e-20 104.4 97 51.5
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 2.5e-19 100.5 92 50.0
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.5e-19 100.5 85 54.1
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 1.4e-17 94.7 58 77.6
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 2.6e-16 90.5 62 67.7
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.2e-14 83.6 92 51.1
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.3e-12 77.4 75 52.0
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 5.7e-11 72.8 47 70.2
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 4.8e-10 69.7 51 58.8
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 6.3e-10 69.3 62 51.6
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.4e-06 58.2 91 33.0


User provided reference genes

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