Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 0.0e+00 1216.1 622 100.0
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 0.0e+00 1187.9 618 98.2
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 0.0e+00 1094.0 614 90.6
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 0.0e+00 1077.0 615 88.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 4.2e-310 1067.4 607 89.6
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 6.1e-301 1036.9 624 84.9
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 8.8e-300 1033.1 625 83.7
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 1.5e-299 1032.3 600 87.5
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.3e-298 1029.2 594 86.4
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.3e-295 1019.2 595 86.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 2.9e-295 1018.1 624 83.2
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.1e-294 1016.1 608 84.9
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.5e-294 1015.8 619 83.4
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 3.2e-294 1014.6 633 82.6
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.0e-292 1009.6 600 84.7
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 5.2e-292 1007.3 600 84.5
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 8.8e-292 1006.5 599 84.6
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 8.8e-292 1006.5 624 81.9
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.5e-291 1005.7 614 83.1
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 9.7e-291 1003.0 614 83.2
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 9.7e-291 1003.0 625 82.9
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 4.8e-290 1000.7 618 82.5
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 4.1e-289 997.7 600 84.3
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 5.3e-289 997.3 618 81.6
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 9.1e-289 996.5 618 81.7
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.6e-288 995.7 593 85.0
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.7e-287 992.3 625 80.6
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.7e-287 992.3 620 81.6
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 3.8e-287 991.1 636 81.0
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 5.0e-287 990.7 614 82.2
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.0e-287 990.7 636 80.8
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.1e-286 989.6 614 82.1
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.1e-286 989.6 620 81.3
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.9e-286 988.8 605 84.5
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.6e-285 985.7 636 80.7
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.1e-285 985.3 623 81.1
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.3e-284 981.9 614 81.4
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 2.3e-284 981.9 636 80.3
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 3.4e-283 978.0 603 81.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.4e-283 977.6 620 81.1
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 7.5e-283 976.9 603 81.9
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.2e-282 975.3 628 81.4
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.8e-282 974.9 611 82.8
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.7e-282 974.5 628 79.6
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.3e-282 973.8 619 81.6
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.4e-281 972.6 599 82.1
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 7.0e-281 970.3 618 81.1
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 3.5e-280 968.0 599 81.5
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 3.5e-280 968.0 626 80.0
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 5.9e-280 967.2 605 82.3
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.0e-279 964.1 628 80.4
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 6.5e-279 963.8 599 81.1
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.5e-279 963.8 578 84.6
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.1e-278 963.0 603 81.4
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 2.5e-278 961.8 603 80.3
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.6e-277 959.1 629 79.5
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 6.1e-277 957.2 605 80.7
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.6e-275 951.8 578 84.3
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 7.5e-275 950.3 608 79.8
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 7.0e-273 943.7 605 80.8
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.6e-272 942.6 627 77.7
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.7e-272 941.8 626 78.3
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.7e-271 939.1 623 78.3
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.9e-271 938.3 623 78.7
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 8.6e-271 936.8 594 81.5
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.5e-270 936.0 619 77.9
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 5.6e-270 934.1 571 82.3
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.0e-268 929.9 620 78.2
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.0e-268 929.9 602 78.1
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 6.4e-266 920.6 652 74.8
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.1e-265 919.8 642 75.4
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 3.2e-265 918.3 602 77.1
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.1e-265 917.9 597 78.2
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 4.3e-262 907.9 602 77.2
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 7.3e-262 907.1 540 84.6
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.2e-261 906.4 546 84.2
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 8.0e-261 903.7 600 77.2
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 4.9e-258 894.4 602 75.6
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 8.3e-258 893.6 601 77.5
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 3.2e-257 891.7 621 75.7
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 8.6e-255 883.6 600 76.2
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.5e-254 882.9 671 69.7
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.3e-254 881.7 614 74.1
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.7e-253 877.9 604 75.5
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.8e-252 875.9 577 77.1
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 8.9e-252 873.6 624 74.0
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.4e-251 871.7 634 72.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.9e-250 867.8 615 73.3
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 6.4e-250 867.5 601 74.4
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.2e-248 863.2 624 73.1
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 8.6e-247 857.1 604 74.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.1e-244 850.1 607 74.1
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.4e-244 849.7 617 72.4
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.6e-243 845.5 598 73.9
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.4e-243 845.1 558 77.2
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.4e-243 845.1 558 77.2
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.9e-242 842.0 569 76.1
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.1e-241 840.1 593 74.7
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 6.0e-240 834.3 600 72.3
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 7.8e-240 833.9 600 72.8
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.0e-239 833.6 588 74.3
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.7e-239 832.8 600 72.2
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.3e-239 832.4 587 73.6
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 3.0e-239 832.0 600 72.5
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 3.0e-239 832.0 600 72.5
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 3.0e-239 832.0 571 76.0
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.1e-238 830.1 624 70.5
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.1e-238 830.1 607 73.0
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 2.5e-238 828.9 594 73.7
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 9.6e-238 827.0 581 74.4
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.8e-237 825.5 591 73.4
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.8e-236 822.8 572 74.5
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.5e-235 819.7 619 69.3
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 5.8e-235 817.8 618 70.4
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 3.8e-234 815.1 577 74.2
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 7.1e-233 810.8 581 73.5
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 9.3e-233 810.4 575 73.9
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 7.8e-232 807.4 614 71.5
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 7.8e-232 807.4 556 76.6
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 4.5e-227 791.6 546 75.3
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 5.8e-227 791.2 599 70.3
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.1e-220 768.8 588 68.5
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 5.3e-220 768.1 527 74.0
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.0e-219 766.1 535 73.3
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 9.9e-219 763.8 595 66.7
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.5e-217 758.1 630 64.0
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 2.7e-216 755.7 617 68.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.3e-212 741.5 519 73.8
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.3e-212 741.5 608 65.8
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 9.0e-212 740.7 552 68.7
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 3.8e-210 735.3 610 63.6
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.4e-209 733.4 420 86.7
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.1e-208 729.6 407 88.2
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 9.6e-206 720.7 417 85.6
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.8e-204 716.5 633 62.2
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 2.4e-204 716.1 416 87.3
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 6.5e-202 708.0 555 67.0
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.0e-199 699.1 565 64.2
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-198 696.8 527 68.1
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.7e-198 694.1 527 67.4
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.0e-191 672.5 495 69.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 6.7e-191 671.4 518 68.1
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.8e-189 665.2 543 65.0
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.5e-187 658.7 461 76.4
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 6.5e-186 654.8 530 63.8
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 2.9e-170 602.8 584 54.8
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.6e-163 580.5 532 60.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.7e-162 577.0 383 76.5
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.3e-157 560.8 476 60.5
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 6.3e-157 558.5 358 80.7
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.6e-153 545.4 340 82.6
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.6e-138 495.4 461 59.0
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 4.2e-108 396.4 239 81.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.5e-76 290.8 157 91.7
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-66 258.1 145 88.3
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 3.2e-52 210.7 167 65.3
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.5e-49 201.8 167 61.1
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 1.7e-48 198.4 164 61.6
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.1e-47 195.7 164 61.0
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 2.2e-40 171.4 123 69.9
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 9.2e-39 166.0 98 84.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 3.1e-26 124.4 94 67.0
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.1e-23 115.9 115 56.5
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.1e-23 114.0 94 61.7
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.6e-20 103.6 60 86.7
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.3e-20 103.2 493 24.1
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.3e-20 103.2 312 27.9
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 6.8e-18 96.7 126 41.3
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 9.9e-17 92.8 86 55.8
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-15 89.0 190 31.6
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 2.1e-14 85.1 100 53.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-14 84.7 194 34.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 6.0e-14 83.6 70 71.4
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.5e-09 68.9 74 56.8
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 1.5e-09 68.9 56 53.6
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.2e-07 60.8 74 48.6


User provided reference genes

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