Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 5.0e-67 257.7 135 100.0
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 1.4e-53 213.0 135 90.4
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 9.5e-42 173.7 134 71.6
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.1e-37 160.2 130 68.5
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 3.3e-34 148.7 135 64.4
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.4e-30 134.0 138 53.6
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.4e-30 134.0 138 53.6
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.2e-29 131.7 137 54.0
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 9.3e-29 130.6 125 61.6
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.6e-28 129.8 136 52.9
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 2.1e-28 129.4 121 57.9
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 2.7e-28 129.0 130 54.6
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.7e-28 129.0 133 54.1
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.3e-27 126.7 125 57.6
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 8.7e-27 124.0 139 53.2
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.5e-26 123.2 132 52.3
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 1.9e-26 122.9 124 57.3
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 2.5e-26 122.5 133 54.1
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 3.3e-26 122.1 124 53.2
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 9.6e-26 120.6 133 51.9
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 1.4e-24 116.7 119 49.6
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 3.1e-24 115.5 129 49.6
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.0e-24 115.2 114 55.3
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 6.9e-24 114.4 133 48.1
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 1.2e-23 113.6 115 54.8
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 2.6e-23 112.5 122 53.3
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 7.6e-23 110.9 122 47.5
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 1.7e-22 109.8 135 47.4
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 6.4e-22 107.8 137 45.3
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.4e-21 106.7 137 44.5
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 1.4e-21 106.7 135 43.0
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 1.9e-21 106.3 123 47.2
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.9e-21 106.3 137 45.3
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 2.4e-21 105.9 133 47.4
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 9.3e-21 104.0 143 45.5
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 1.2e-20 103.6 136 45.6
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 1.6e-20 103.2 142 45.8
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.6e-20 103.2 132 44.7
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.1e-20 102.8 132 43.9
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 2.7e-20 102.4 133 43.6
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 3.5e-20 102.1 114 52.6
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 7.9e-20 100.9 137 47.4
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.8e-19 99.8 132 44.7
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 1.8e-19 99.8 136 44.1
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 1.8e-19 99.8 116 50.0
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 2.3e-19 99.4 141 46.8
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.1e-19 98.2 150 41.3
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 6.7e-19 97.8 129 45.7
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 1.5e-18 96.7 130 44.6
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 1.5e-18 96.7 133 45.9
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 1.9e-18 96.3 107 47.7
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 5.6e-18 94.7 126 40.5
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 5.6e-18 94.7 141 44.0
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 7.4e-18 94.4 150 40.0
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.3e-17 93.6 119 45.4
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.6e-17 93.2 150 40.0
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 1.6e-17 93.2 140 42.9
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 2.8e-17 92.4 120 47.5
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 2.8e-17 92.4 125 44.0
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.8e-17 92.4 124 46.0
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.8e-17 92.4 124 46.0
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 2.8e-17 92.4 120 44.2
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.6e-17 92.0 131 44.3
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 3.6e-17 92.0 129 45.7
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 3.6e-17 92.0 124 45.2
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 4.8e-17 91.7 125 42.4
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 4.8e-17 91.7 135 43.0
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 6.2e-17 91.3 148 39.2
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 1.1e-16 90.5 142 38.7
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 1.1e-16 90.5 115 42.6
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.4e-16 90.1 135 41.5
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.8e-16 89.7 134 41.0
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 2.4e-16 89.4 120 41.7
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.1e-16 89.0 133 43.6
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 3.1e-16 89.0 127 43.3
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 4.0e-16 88.6 135 42.2
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 9.0e-16 87.4 133 41.4
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 1.2e-15 87.0 136 43.4
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 1.5e-15 86.7 134 44.0
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.5e-15 86.7 134 44.0
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.0e-15 86.3 133 42.9
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 2.0e-15 86.3 117 42.7
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 3.4e-15 85.5 111 44.1
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 3.4e-15 85.5 129 40.3
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 4.5e-15 85.1 142 40.8
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 7.6e-15 84.3 107 46.7
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 9.9e-15 84.0 115 43.5
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 1.3e-14 83.6 103 46.6
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 1.7e-14 83.2 144 41.0
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 3.8e-14 82.0 134 41.8
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 4.9e-14 81.6 109 43.1
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 4.9e-14 81.6 140 40.0
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 6.4e-14 81.3 125 44.8
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 8.4e-14 80.9 117 39.3
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 8.4e-14 80.9 102 48.0
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 8.4e-14 80.9 129 42.6
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.4e-13 80.1 115 41.7
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 3.2e-13 79.0 127 44.1
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.2e-13 79.0 131 41.2
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.2e-13 79.0 100 44.0
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 3.2e-13 79.0 121 38.8
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 3.2e-13 79.0 130 40.8
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 7.1e-13 77.8 120 43.3
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 7.1e-13 77.8 133 42.1
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.2e-12 77.0 122 40.2
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 1.6e-12 76.6 137 38.0
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 4.6e-12 75.1 121 39.7
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 6.0e-12 74.7 133 39.8
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 6.0e-12 74.7 113 38.9
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 1.0e-11 73.9 123 37.4
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 1.8e-11 73.2 140 42.9
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 2.3e-11 72.8 124 39.5
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 2.3e-11 72.8 124 39.5
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 2.3e-11 72.8 117 37.6
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 3.0e-11 72.4 116 42.2
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 3.0e-11 72.4 125 42.4
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 3.9e-11 72.0 98 45.9
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 3.9e-11 72.0 117 36.8
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 5.1e-11 71.6 132 40.2
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 8.7e-11 70.9 131 39.7
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 8.7e-11 70.9 136 33.8
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 1.1e-10 70.5 128 41.4
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 1.1e-10 70.5 128 41.4
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 2.5e-10 69.3 131 38.9
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 2.5e-10 69.3 124 39.5
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 2.5e-10 69.3 93 46.2
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 5.6e-10 68.2 91 42.9
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 3.7e-09 65.5 122 41.0
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 3.7e-09 65.5 122 41.0
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 6.2e-09 64.7 120 40.0
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 1.8e-08 63.2 121 38.0
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 1.8e-08 63.2 121 38.0
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 1.8e-08 63.2 129 36.4
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 4.0e-08 62.0 129 35.7
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 4.0e-08 62.0 129 35.7
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 1.2e-07 60.5 44 61.4
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 1.2e-07 60.5 133 35.3
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.5e-07 60.1 48 58.3
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.5e-07 60.1 115 39.1
CDE02G1081 Ceratophyllum demersum HOM05D001624 ORTHO05D001530 2.0e-07 59.7 113 36.3
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 5.8e-07 58.2 133 33.1
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 5.8e-07 58.2 115 38.3
Dinv44235 Davidia involucrata HOM05D005211 ORTHO05D006148 1.7e-06 56.6 77 49.4
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 3.8e-06 55.5 96 36.5
Ca_10180_v3 Cicer arietinum L. HOM05D001624 ORTHO05D001530 6.5e-06 54.7 130 31.5
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 6.5e-06 54.7 167 30.5
TPR.G2609 Trifolium pratense HOM05D001624 ORTHO05D001530 6.5e-06 54.7 130 31.5
HPP92_008832 Vanilla planifolia HOM05D001624 ORTHO05D001530 6.5e-06 54.7 119 37.8


User provided reference genes

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