Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 2.1e-149 532.3 265 100.0
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.1e-139 500.0 264 95.5
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 2.5e-126 455.7 263 85.9
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.2e-120 436.8 251 84.5
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 2.2e-111 406.0 251 81.3
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 8.5e-111 404.1 251 79.7
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 4.2e-110 401.7 250 77.6
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 4.2e-110 401.7 251 80.1
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 3.6e-109 398.7 251 78.9
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.8e-108 396.4 251 77.7
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.2e-107 393.7 260 75.0
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.6e-107 392.5 251 77.3
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 3.3e-107 392.1 251 77.3
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 4.4e-107 391.7 260 74.2
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 5.7e-107 391.3 251 79.3
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 7.5e-107 391.0 251 76.1
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 9.7e-107 390.6 260 74.6
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 9.7e-107 390.6 253 75.9
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.3e-106 390.2 251 78.5
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.3e-106 390.2 251 77.7
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.7e-106 389.8 251 79.3
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 2.8e-106 389.0 260 76.2
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 8.3e-106 387.5 251 76.5
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 3.1e-105 385.6 252 77.4
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 4.1e-105 385.2 253 75.1
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 5.3e-105 384.8 251 76.1
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 5.3e-105 384.8 251 76.9
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 9.1e-105 384.0 249 74.3
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.0e-104 382.9 251 75.3
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 4.5e-104 381.7 251 75.7
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.0e-103 380.6 249 74.7
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.3e-103 380.2 251 77.7
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.7e-103 379.8 253 74.3
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.7e-103 379.8 251 77.7
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.5e-103 377.9 251 76.5
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.5e-103 377.9 251 76.5
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 8.5e-103 377.5 257 73.5
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.1e-102 377.1 251 75.3
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.9e-102 376.3 252 73.4
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.9e-102 376.3 252 73.8
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 2.5e-102 375.9 251 76.1
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.5e-102 375.9 251 76.1
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 2.5e-102 375.9 252 73.4
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.2e-102 375.6 251 76.1
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.2e-102 375.6 251 76.1
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.2e-102 375.2 251 72.9
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.5e-102 374.8 251 72.5
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 5.5e-102 374.8 251 74.5
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.6e-101 373.2 251 75.7
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.6e-101 373.2 251 74.9
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.1e-101 372.9 251 72.1
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.1e-101 372.9 252 73.0
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.7e-101 372.5 251 75.3
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 2.7e-101 372.5 253 72.3
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.7e-101 372.5 251 74.1
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 6.1e-101 371.3 253 72.7
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 3.0e-100 369.0 251 75.3
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 3.0e-100 369.0 251 71.3
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 4.0e-100 368.6 251 72.9
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 8.8e-100 367.5 253 73.1
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 4.4e-99 365.2 249 70.3
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.3e-98 363.6 251 70.9
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.3e-98 363.6 251 70.9
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.3e-98 363.6 251 70.5
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.7e-98 363.2 251 70.1
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.2e-98 362.8 251 70.5
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.2e-98 362.8 252 72.2
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 2.8e-98 362.5 250 70.0
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 3.7e-98 362.1 251 70.5
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 3.7e-98 362.1 252 71.4
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.7e-98 362.1 253 69.6
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.7e-98 362.1 251 70.1
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 6.3e-98 361.3 251 71.3
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 8.3e-98 360.9 242 71.9
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.1e-97 360.5 251 69.7
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.8e-97 359.8 252 69.8
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 5.4e-97 358.2 251 70.5
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 5.4e-97 358.2 251 70.5
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 5.4e-97 358.2 251 71.3
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 5.4e-97 358.2 251 70.5
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 9.1e-97 357.5 251 70.5
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-96 357.1 251 70.1
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.6e-96 356.7 251 68.1
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.0e-96 356.3 262 68.7
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.0e-96 356.3 242 71.5
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 2.0e-96 356.3 251 70.5
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 4.5e-96 355.1 252 69.8
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.0e-95 354.0 253 67.6
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.3e-95 352.8 251 70.1
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.9e-95 352.4 251 69.7
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 3.8e-95 352.1 244 68.9
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.5e-94 350.1 251 67.3
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.5e-94 350.1 253 67.2
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.9e-94 349.7 249 67.9
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 3.3e-94 349.0 251 68.1
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 9.5e-94 347.4 251 68.1
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.6e-93 346.7 254 69.7
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.1e-93 346.3 251 67.7
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 3.6e-93 345.5 255 66.3
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 6.1e-93 344.7 258 65.1
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.0e-93 344.4 251 66.5
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.8e-92 343.2 251 68.5
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 3.0e-92 342.4 244 69.7
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 3.0e-92 342.4 244 69.7
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 5.2e-92 341.7 251 67.3
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 5.2e-92 341.7 251 64.1
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 8.9e-92 340.9 275 63.6
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 8.9e-92 340.9 275 63.6
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.5e-91 340.1 244 68.9
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 6.3e-90 334.7 254 65.7
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.0e-88 329.7 242 66.1
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.5e-88 328.6 242 66.1
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.0e-87 327.4 295 59.7
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.3e-87 327.0 226 73.0
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.9e-87 325.9 251 65.3
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.6e-85 320.1 291 58.8
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.0e-84 315.5 251 64.1
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 2.6e-83 312.8 185 83.2
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.2e-82 309.7 235 66.0
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 2.2e-82 309.7 251 61.8
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 4.9e-82 308.5 240 61.7
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 6.4e-82 308.1 246 63.8
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 7.0e-81 304.7 254 60.6
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.5e-80 302.4 202 74.3
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 1.9e-78 296.6 248 60.1
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 2.5e-78 296.2 174 81.6
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.2e-76 288.5 245 62.0
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 8.9e-76 287.7 245 59.6
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 3.4e-75 285.8 175 78.3
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 2.1e-72 276.6 245 58.8
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.7e-66 256.9 153 79.7
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.9e-66 256.1 181 73.5
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.0e-63 247.7 147 81.6
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.0e-63 247.7 147 81.6
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 3.3e-62 242.7 235 51.1
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.2e-61 240.7 187 64.7
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 4.0e-52 209.1 180 55.0
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 4.9e-50 202.2 175 58.9
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 3.0e-47 193.0 180 57.8
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.6e-45 187.2 189 54.0
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.6e-45 187.2 189 54.0
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 2.5e-38 163.3 110 71.8
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 7.4e-38 161.8 174 45.4
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 9.0e-36 154.8 197 44.7
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.3e-34 151.0 88 80.7
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 1.1e-28 131.3 84 76.2
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 3.8e-26 122.9 73 80.8
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 5.5e-25 119.0 63 85.7
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.6e-24 117.5 174 37.4
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 5.7e-22 109.0 168 38.7
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 6.3e-21 105.5 108 56.5
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 9.0e-20 101.7 99 55.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 9.0e-20 101.7 99 55.6
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 9.0e-20 101.7 76 68.4
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 9.7e-14 81.6 94 52.1
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 5.3e-12 75.9 83 54.2
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 3.4e-11 73.2 52 63.5
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 3.4e-11 73.2 236 28.8
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.6e-08 64.3 184 28.3
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 7.9e-08 62.0 54 61.1
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 6.7e-07 58.9 65 49.2
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 3.3e-06 56.6 38 71.1
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 5.7e-06 55.8 59 47.5


User provided reference genes

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