Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10888 Corylus avellana HOM05D005416 ORTHO05D026383 1.0e-60 236.5 114 100.0
CiPaw.06G051400 Carya illinoinensis HOM05D005416 ORTHO05D007956 2.1e-42 175.6 105 83.8
FAN07G1459 Fragaria x ananassa HOM05D005416 ORTHO05D007956 1.1e-35 153.3 108 69.4
FAN17G2258 Fragaria x ananassa HOM05D005416 ORTHO05D007956 5.6e-35 151.0 108 69.4
Thecc.02G292000 Theobroma cacao HOM05D005416 ORTHO05D007956 7.3e-35 150.6 105 68.6
RcHm_v2.0_Chr4g0443121 Rosa chinensis HOM05D005416 ORTHO05D007956 9.5e-35 150.2 108 70.4
TWI53G1568 Tripterygium wilfordii HOM05D005416 ORTHO05D007956 9.5e-35 150.2 104 72.1
Duzib251G0900 Durio zibethinus HOM05D005416 ORTHO05D007956 2.8e-34 148.7 105 67.6
MD13G1020900 Malus domestica HOM05D005416 ORTHO05D007956 4.7e-34 147.9 108 69.4
MD16G1019300 Malus domestica HOM05D005416 ORTHO05D007956 6.2e-34 147.5 108 70.4
COL.COLO4_16581 Corchorus olitorius HOM05D005416 ORTHO05D007956 1.4e-33 146.4 106 68.9
vmacro23117 Vaccinium macrocarpon HOM05D005416 ORTHO05D007956 4.0e-33 144.8 104 68.3
Eucgr.B02671 Eucalyptus grandis HOM05D005416 ORTHO05D007956 5.2e-33 144.4 103 70.9
CSS0046016 Camellia sinensis var. sinensis HOM05D005416 ORTHO05D007956 2.0e-32 142.5 105 70.5
Sabra08G0102700 Salix brachista HOM05D005416 ORTHO05D007956 2.0e-32 142.5 106 69.8
QL03p035642 Quercus lobata HOM05D005416 ORTHO05D007956 3.4e-32 141.7 107 72.0
Nn3g18354 Nelumbo nucifera HOM05D005416 ORTHO05D007956 4.4e-32 141.4 104 64.4
Potri.008G134200 Populus trichocarpa HOM05D005416 ORTHO05D007956 4.4e-32 141.4 105 69.5
CSS0013875 Camellia sinensis var. sinensis HOM05D005416 ORTHO05D007956 7.6e-32 140.6 105 69.5
Cpa.g.sc2.205 Carica papaya HOM05D005416 ORTHO05D007956 6.4e-31 137.5 106 63.2
GSVIVG01011666001 Vitis vinifera HOM05D005416 ORTHO05D007956 1.9e-30 136.0 105 69.5
Ciclev10015103m.g Citrus clementina HOM05D005416 ORTHO05D007956 3.2e-30 135.2 108 63.0
Lalb_Chr16g0387601 Lupinus albus HOM05D005416 ORTHO05D007956 5.4e-30 134.4 109 63.3
Actinidia36630 Actinidia chinensis HOM05D005416 ORTHO05D007956 7.1e-30 134.0 105 66.7
PGSC0003DMG400009729 Solanum tuberosum HOM05D005416 ORTHO05D007956 7.1e-30 134.0 111 64.0
Gohir.A12G151900 Gossypium hirsutum HOM05D005416 ORTHO05D007956 9.2e-30 133.7 105 61.0
Gorai.008G168000 Gossypium raimondii HOM05D005416 ORTHO05D007956 9.2e-30 133.7 105 61.0
TAR371G0290 Trochodendron aralioides HOM05D005416 ORTHO05D007956 1.2e-29 133.3 105 65.7
TAR371G0369 Trochodendron aralioides HOM05D005416 ORTHO05D007956 2.1e-29 132.5 105 62.9
arahy.Tifrunner.gnm1.ann1.B96KF5 Arachis hypogaea HOM05D005416 ORTHO05D007956 2.7e-29 132.1 105 67.6
CANSAT01G1131 Cannabis sativa HOM05D005416 ORTHO05D007956 3.5e-29 131.7 105 62.9
Sopen01g001400 Solanum pennellii HOM05D005416 ORTHO05D007956 3.5e-29 131.7 111 64.9
arahy.Tifrunner.gnm1.ann1.AF56D0 Arachis hypogaea HOM05D005416 ORTHO05D007956 7.8e-29 130.6 105 66.7
PGR102G2697 Punica granatum HOM05D005416 ORTHO05D007956 7.8e-29 130.6 108 64.8
Solyc01g005380.3 Solanum lycopersicum HOM05D005416 ORTHO05D007956 3.0e-28 128.6 111 63.1
Atru.chr11.944 Acer truncatum HOM05D005416 ORTHO05D007956 2.5e-27 125.6 109 59.6
Lj3C865G4 Lonicera japonica HOM05D005416 ORTHO05D007956 7.3e-27 124.0 104 62.5
DCAR_030261 Daucus carota HOM05D005416 ORTHO05D007956 9.6e-27 123.6 104 59.6
ClCG01G006540 Citrullus lanatus HOM05D005416 ORTHO05D007956 1.6e-26 122.9 113 61.1
Oeu044016.1 Olea europaea HOM05D005416 ORTHO05D007956 3.6e-26 121.7 111 62.2
PSO478G1161 Papaver somniferum HOM05D005416 ORTHO05D007956 8.1e-26 120.6 104 56.7
Lsat_1_v5_gn_8_46201 Lactuca sativa HOM05D005416 ORTHO05D007956 2.4e-25 119.0 116 56.0
MELO3C005273.2 Cucumis melo HOM05D005416 ORTHO05D007956 3.1e-25 118.6 106 62.3
Nitab4.5_0000198g0220 Nicotiana tabacum HOM05D005416 ORTHO05D007956 3.1e-25 118.6 111 57.7
Nitab4.5_0000922g0060 Nicotiana tabacum HOM05D005416 ORTHO05D007956 3.1e-25 118.6 111 58.6
SGA_v2.0_scaffold139G35433 Striga asiatica HOM05D005416 ORTHO05D007956 5.2e-25 117.9 111 58.6
unitig_62.g23745 Utricularia gibba HOM05D005416 ORTHO05D007956 1.2e-24 116.7 106 57.5
BcaC05g26700 Brassica carinata HOM05D005416 ORTHO05D007956 1.5e-24 116.3 106 53.8
Lj4g0002826 Lotus japonicus HOM05D005416 ORTHO05D007956 1.5e-24 116.3 105 58.1
AUR62038467 Chenopodium quinoa HOM05D005416 ORTHO05D007956 2.6e-24 115.5 102 56.9
Cc11_g07140 Coffea canephora HOM05D005416 ORTHO05D007956 2.6e-24 115.5 105 59.0
ECA233G0392 Erigeron canadensis HOM05D005416 ORTHO05D007956 3.4e-24 115.2 99 60.6
CsaV3_5G028150 Cucumis sativus L. HOM05D005416 ORTHO05D007956 4.4e-24 114.8 110 59.1
HanXRQChr12g0362651 Helianthus annuus HOM05D005416 ORTHO05D007956 5.8e-24 114.4 103 58.3
Sp1g23160 Schrenkiella parvula HOM05D005416 ORTHO05D007956 5.8e-24 114.4 106 55.7
THA.LOC104825565 Tarenaya hassleriana HOM05D005416 ORTHO05D007956 5.8e-24 114.4 108 54.6
Glyma.08G045400 Glycine max HOM05D005416 ORTHO05D007956 7.6e-24 114.0 105 60.0
CARHR026460 Cardamine hirsuta HOM05D005416 ORTHO05D007956 1.3e-23 113.2 107 53.3
Migut.E00473 Erythranthe guttata HOM05D005416 ORTHO05D007956 1.3e-23 113.2 112 53.6
Lalb_Chr05g0222241 Lupinus albus HOM05D005416 ORTHO05D007956 1.3e-23 113.2 105 58.1
AUR62014156 Chenopodium quinoa HOM05D005416 ORTHO05D007956 2.2e-23 112.5 102 54.9
SalBow2G1542 Salvia bowleyana HOM05D005416 ORTHO05D007956 2.9e-23 112.1 110 57.3
VMungo0251G2936 Vigna mungo HOM05D005416 ORTHO05D007956 4.9e-23 111.3 105 58.1
A09p39010 Brassica napus HOM05D005416 ORTHO05D007956 8.4e-23 110.5 98 54.1
BraA09t39401Z Brassica rapa HOM05D005416 ORTHO05D007956 8.4e-23 110.5 98 54.1
CAN.G36.1 Capsicum annuum HOM05D005416 ORTHO05D007956 4.2e-22 108.2 104 53.8
Medtr8g105200 Medicago truncatula HOM05D005416 ORTHO05D007956 5.4e-22 107.8 106 54.7
Rhsim09G0090200 Rhododendron simsii HOM05D005416 ORTHO05D007956 5.4e-22 107.8 101 59.4
Phvul.002G320700 Phaseolus vulgaris HOM05D005416 ORTHO05D007956 7.1e-22 107.5 104 53.8
Hund24928 Selenicereus undatus HOM05D005416 ORTHO05D007956 9.3e-22 107.1 100 54.0
Carub.0001s2548 Capsella rubella HOM05D005416 ORTHO05D007956 1.2e-21 106.7 107 51.4
AL1G40300 Arabidopsis lyrata HOM05D005416 ORTHO05D007956 1.6e-21 106.3 107 51.4
Ca_17262_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 1.6e-21 106.3 106 56.6
Ca_17283_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 1.6e-21 106.3 106 56.6
Ah.03g137430 Amaranthus hybridus HOM05D005416 ORTHO05D007956 2.1e-21 105.9 105 51.4
BcaC05g26502 Brassica carinata HOM05D005416 ORTHO05D007956 2.7e-21 105.5 98 52.0
BolC5t31280H Brassica oleracea HOM05D005416 ORTHO05D007956 2.7e-21 105.5 98 52.0
Thhalv10007532m.g Eutrema salsugineum HOM05D005416 ORTHO05D007956 3.5e-21 105.1 104 53.8
TPR.G27724 Trifolium pratense HOM05D005416 ORTHO05D007956 7.8e-21 104.0 106 53.8
CDE05G0750 Ceratophyllum demersum HOM05D005416 ORTHO05D007956 1.0e-20 103.6 105 51.4
Peaxi162Scf00655g00217 Petunia axillaris HOM05D005416 ORTHO05D007956 1.0e-20 103.6 88 63.6
AT1G24610 Arabidopsis thaliana HOM05D005416 ORTHO05D007956 2.3e-20 102.4 107 50.5
Actinidia12392 Actinidia chinensis HOM05D005416 ORTHO05D026383 6.6e-20 100.9 107 57.0
C05p25520 Brassica napus HOM05D005416 ORTHO05D007956 1.1e-19 100.1 81 55.6
Psat7g008160 Pisum sativum HOM05D005416 ORTHO05D007956 1.1e-19 100.1 112 50.0
ATR0753G010 Amborella trichopoda HOM05D005416 ORTHO05D007956 1.5e-19 99.8 89 55.1
Aa31LG7G9430 Aethionema arabicum HOM05D005416 ORTHO05D007956 2.5e-19 99.0 106 48.1
A09p38980 Brassica napus HOM05D005416 ORTHO05D007956 2.5e-19 99.0 96 52.1
FAN22G0290 Fragaria x ananassa HOM05D005416 ORTHO05D026383 4.8e-18 94.7 67 67.2
FAN12G4277 Fragaria x ananassa HOM05D005416 ORTHO05D007956 1.4e-17 93.2 66 65.2
Os02g0733800 Oryza sativa ssp. japonica HOM05D005416 ORTHO05D007956 6.9e-17 90.9 82 52.4
Zm00001eb190260 Zea mays HOM05D005416 ORTHO05D007956 2.6e-16 89.0 107 46.7
Aqoxy3G00017 Aquilegia oxysepala HOM05D005416 ORTHO05D007956 5.4e-14 81.3 83 55.4
SEGI_37558 Sequoiadendron giganteum HOM05D005416 ORTHO05D007956 2.1e-13 79.3 86 44.2
Mapoly0108s0064 Marchantia polymorpha HOM05D005416 ORTHO05D007956 8.1e-10 67.4 106 35.8
COL.COLO4_02853 Corchorus olitorius HOM05D005416 ORTHO05D026383 1.4e-09 66.6 44 72.7
VMungo0540G2168 Vigna mungo HOM05D005416 ORTHO05D007956 3.4e-08 62.0 62 54.8


User provided reference genes

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