Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 8.9e-115 417.2 243 100.0
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 2.9e-105 385.6 247 94.3
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 2.0e-90 336.3 248 82.7
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 2.9e-81 305.8 246 71.1
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 4.9e-81 305.1 246 69.1
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 3.2e-80 302.4 246 71.5
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 3.2e-80 302.4 244 75.4
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 1.2e-79 300.4 246 71.1
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 3.0e-78 295.8 248 73.8
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 3.9e-78 295.4 251 70.9
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 3.9e-78 295.4 247 66.8
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 1.5e-77 293.5 249 73.9
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 1.5e-77 293.5 245 69.0
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 1.9e-77 293.1 201 76.6
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 7.4e-77 291.2 254 70.5
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 1.3e-76 290.4 248 73.8
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 2.1e-76 289.7 246 65.9
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 6.2e-76 288.1 243 77.4
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 6.2e-76 288.1 271 72.0
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 8.2e-76 287.7 268 63.4
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 5.3e-75 285.0 246 68.3
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 5.3e-75 285.0 248 74.2
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 2.6e-74 282.7 247 64.0
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 3.4e-74 282.3 244 63.5
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 7.6e-74 281.2 250 68.8
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 1.7e-73 280.0 244 63.9
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 4.9e-73 278.5 253 72.3
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 1.1e-72 277.3 267 61.0
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.4e-72 276.9 248 69.4
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 1.4e-72 276.9 248 69.4
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 1.4e-72 276.9 246 64.6
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 1.2e-71 273.9 245 75.9
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 1.2e-71 273.9 245 76.3
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 1.6e-71 273.5 248 63.7
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.6e-71 273.5 249 62.2
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 4.6e-71 271.9 198 73.2
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 6.7e-70 268.1 247 71.7
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.5e-69 266.2 246 69.5
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 3.3e-69 265.8 203 71.9
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.3e-69 265.8 254 62.2
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 5.7e-69 265.0 192 75.0
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 9.7e-69 264.2 255 62.0
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 9.7e-69 264.2 247 71.3
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 3.7e-68 262.3 251 62.5
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.1e-67 260.8 247 61.9
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 4.1e-67 258.8 251 64.1
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 4.1e-67 258.8 247 61.5
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 6.9e-67 258.1 247 62.8
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 2.0e-66 256.5 245 61.2
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.4e-66 255.8 203 72.4
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 7.7e-66 254.6 255 59.6
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 1.0e-65 254.2 251 65.3
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.3e-65 253.8 247 69.6
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 2.2e-65 253.1 258 69.4
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 2.9e-65 252.7 247 68.8
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 1.4e-64 250.4 188 72.9
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 9.4e-64 247.7 248 57.7
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.2e-63 247.3 263 63.5
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 1.6e-63 246.9 294 58.5
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 1.4e-62 243.8 246 58.9
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 3.0e-62 242.7 187 71.1
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 3.3e-61 239.2 257 57.6
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 7.4e-61 238.0 251 60.2
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 1.7e-60 236.9 278 59.4
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 3.7e-60 235.7 195 67.2
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 3.7e-60 235.7 195 67.2
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 1.1e-59 234.2 248 59.7
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 9.1e-59 231.1 255 56.1
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 2.5e-56 223.0 249 64.7
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.2e-55 220.7 249 52.6
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 1.6e-55 220.3 249 54.6
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 2.1e-55 219.9 253 54.2
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 3.6e-55 219.2 243 55.6
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 3.6e-55 219.2 248 54.4
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 4.7e-55 218.8 243 55.6
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 6.1e-55 218.4 247 60.3
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 7.9e-55 218.0 245 59.6
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 1.0e-54 217.6 254 55.5
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 1.4e-54 217.2 245 56.7
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 2.3e-54 216.5 245 59.6
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 3.0e-54 216.1 245 59.6
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 5.1e-54 215.3 243 53.9
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 5.1e-54 215.3 243 53.9
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 1.1e-53 214.2 243 53.5
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 1.1e-53 214.2 245 53.9
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 5.7e-53 211.8 189 64.0
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 1.7e-52 210.3 245 62.4
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 8.2e-52 208.0 243 54.3
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 4.1e-51 205.7 244 53.7
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.3e-51 205.3 133 79.7
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 7.0e-51 204.9 207 59.9
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 7.0e-51 204.9 207 59.9
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 1.2e-50 204.1 260 51.9
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 2.0e-50 203.4 245 63.3
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 3.5e-50 202.6 207 60.4
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 3.8e-49 199.1 245 62.9
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 5.0e-49 198.7 193 61.1
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 6.5e-49 198.4 193 61.1
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 2.5e-48 196.4 193 60.6
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 4.2e-48 195.7 136 79.4
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 4.2e-48 195.7 256 50.8
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.6e-47 192.6 208 59.1
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.6e-47 192.6 150 72.7
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.0e-46 191.0 150 72.0
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 2.3e-46 189.9 192 60.4
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 6.7e-46 188.3 185 60.5
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 4.4e-45 185.7 135 74.1
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 4.8e-44 182.2 244 48.4
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 1.4e-43 180.6 189 57.7
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 3.2e-40 169.5 262 53.8
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 6.1e-39 165.2 266 45.5
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.0e-38 164.5 121 75.2
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 1.8e-35 153.7 260 40.4
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 1.3e-33 147.5 169 52.7
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 3.8e-33 146.0 248 44.0
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 1.5e-32 144.1 256 39.5
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 3.2e-32 142.9 256 51.2
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 6.8e-30 135.2 185 47.6
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 8.8e-30 134.8 177 50.8
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 1.0e-25 121.3 175 56.0
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 1.4e-22 110.9 175 46.3
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 1.8e-22 110.5 73 74.0
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 4.4e-21 105.9 159 59.1
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 5.7e-21 105.5 74 75.7
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.7e-20 104.0 177 41.2
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 5.4e-19 99.0 135 48.1
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 4.3e-16 89.4 224 33.9
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 5.8e-13 79.0 75 58.7
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.7e-12 76.3 84 50.0
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.7e-12 76.3 184 45.1
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 6.4e-12 75.5 101 51.5
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 5.4e-11 72.4 236 39.8
FAN15G2545 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.5e-08 63.5 120 60.8
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 4.0e-06 56.2 104 42.3


User provided reference genes

Program Settings