Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10615 Corylus avellana HOM05D002925 ORTHO05D003247 0.0e+00 1178.7 590 100.0
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 0.0e+00 1122.8 582 96.7
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 2.2e-244 849.0 588 75.7
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 1.7e-231 806.2 584 72.9
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 3.9e-172 609.0 573 59.5
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 5.6e-163 578.6 576 56.8
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 2.1e-162 576.6 579 55.1
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 6.0e-157 558.5 575 52.3
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 3.0e-156 556.2 570 54.9
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 2.7e-149 533.1 573 54.8
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 1.9e-147 526.9 568 53.3
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 3.7e-146 522.7 570 53.5
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 3.7e-146 522.7 570 53.3
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 2.1e-141 506.9 590 49.5
RcHm_v2.0_Chr6g0271621 Rosa chinensis HOM05D002925 ORTHO05D003247 6.3e-138 495.4 483 58.2
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 1.1e-137 494.6 595 47.6
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 4.1e-137 492.7 583 50.1
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 1.2e-136 491.1 585 47.4
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 1.1e-134 484.6 583 51.3
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 7.2e-134 481.9 587 48.2
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 7.9e-133 478.4 582 48.6
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.3e-132 476.9 571 51.1
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 2.3e-132 476.9 578 46.4
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 6.7e-132 475.3 581 50.8
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 1.5e-131 474.2 588 47.8
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 2.5e-131 473.4 577 48.9
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 9.7e-131 471.5 620 43.7
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 2.2e-130 470.3 590 47.6
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 3.7e-130 469.5 582 47.6
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 1.5e-128 464.2 575 47.7
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 2.9e-127 459.9 582 46.6
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.8e-127 459.5 587 49.7
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 3.0e-124 449.9 592 45.4
Cpa.g.sc42.38 Carica papaya HOM05D002925 ORTHO05D003247 8.8e-124 448.4 526 50.0
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 5.7e-123 445.7 573 47.3
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 3.1e-121 439.9 582 45.0
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 5.0e-119 432.6 581 44.8
GSVIVG01015726001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.0e-116 424.9 451 52.3
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 5.9e-112 409.1 574 42.5
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 1.2e-107 394.8 576 41.8
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 2.0e-107 394.0 456 51.8
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 7.2e-102 375.6 570 40.0
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 8.3e-98 362.1 464 46.6
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 7.0e-97 359.0 582 40.2
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 7.0e-97 359.0 582 40.2
Lj6g0016748 Lotus japonicus HOM05D002925 ORTHO05D003247 3.5e-96 356.7 450 48.2
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 1.8e-92 344.4 583 39.1
Psat1g216280 Pisum sativum HOM05D002925 ORTHO05D003247 5.2e-92 342.8 450 45.3
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 6.8e-92 342.4 591 39.9
vmacro01830 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 2.6e-91 340.5 713 34.8
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 3.3e-86 323.6 454 43.0
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 2.8e-85 320.5 628 35.4
MBI02_g05741_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 3.0e-84 317.0 602 36.5
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 1.2e-83 315.1 581 36.8
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 3.4e-83 313.5 648 35.8
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.4e-81 307.4 656 35.4
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 3.2e-81 307.0 642 35.5
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 5.4e-81 306.2 603 35.7
Actinidia00276 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.2e-80 305.1 443 43.3
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 2.7e-80 303.9 649 35.0
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 6.0e-80 302.8 570 36.1
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 1.7e-79 301.2 581 38.6
Glyma.15G054200 Glycine max HOM05D002925 ORTHO05D003247 2.3e-79 300.8 326 52.1
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.3e-79 300.8 641 35.6
TPR.G14997 Trifolium pratense HOM05D002925 ORTHO05D003247 2.9e-74 283.9 427 42.2
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 2.7e-72 277.3 641 34.5
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 1.4e-68 265.0 581 33.7
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 2.0e-67 261.2 598 33.1
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 2.6e-67 260.8 594 30.5
Dinv09022 Davidia involucrata HOM05D002925 ORTHO05D003247 8.3e-66 255.8 200 62.5
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 8.3e-66 255.8 1047 24.7
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 3.0e-63 247.3 651 31.6
CSS0037093 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.1e-62 245.4 378 39.9
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 7.3e-54 216.1 739 28.1
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 4.4e-51 206.8 245 49.8
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 7.1e-49 199.5 719 28.1
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 1.7e-47 194.9 574 29.4
THA.LOC104807164 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 3.0e-47 194.1 584 30.3
CAN.G523.55 Capsicum annuum HOM05D002925 ORTHO05D003247 3.8e-42 177.2 233 43.3
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 9.3e-41 172.6 782 24.0
EL10Ac9g21492 Beta vulgaris HOM05D002925 ORTHO05D003247 1.6e-40 171.8 666 28.1
CSS0032438 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 7.9e-40 169.5 378 31.5
DCAR_021864 Daucus carota HOM05D002925 ORTHO05D003247 1.8e-39 168.3 520 29.0
SHI39627 Sapria himalayana HOM05D002925 ORTHO05D003247 1.8e-39 168.3 450 30.2
Sc18g0006800 Simmondsia chinensis HOM05D002925 ORTHO05D003247 1.6e-37 161.8 209 45.0
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 4.8e-37 160.2 412 31.6
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 4.0e-36 157.1 300 38.0
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 4.9e-34 150.2 539 28.2
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 1.9e-33 148.3 214 40.2
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 2.4e-33 147.9 444 30.0
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 2.4e-33 147.9 375 31.7
PSO829G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 4.2e-33 147.1 242 38.8
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.6e-32 145.2 502 28.1
Actinidia29592 Actinidia chinensis HOM05D002925 ORTHO05D003247 3.5e-32 144.1 456 28.7
Actinidia00275 Actinidia chinensis HOM05D002925 ORTHO05D003247 6.0e-32 143.3 137 52.6
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 6.0e-32 143.3 798 23.6
RcHm_v2.0_Chr6g0271781 Rosa chinensis HOM05D002925 ORTHO05D003247 6.0e-32 143.3 99 65.7
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 7.9e-32 142.9 506 28.5
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 1.3e-31 142.1 185 42.2
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 1.9e-30 138.3 493 28.2
ATR0782G164 Amborella trichopoda HOM05D002925 ORTHO05D003247 3.3e-30 137.5 471 27.4
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 7.4e-30 136.3 185 45.4
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 1.3e-29 135.6 461 28.9
Haze_22278 Corylus avellana HOM05D002925 ORTHO05D003247 1.6e-29 135.2 209 39.2
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 6.2e-29 133.3 321 31.8
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 8.2e-29 132.9 185 43.8
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 8.2e-29 132.9 446 28.5
TWI56G0820 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 1.1e-28 132.5 396 29.3
Actinidia33129 Actinidia chinensis HOM05D002925 ORTHO05D003247 3.1e-28 131.0 203 39.4
Thecc.08G105500 Theobroma cacao HOM05D002925 ORTHO05D003247 5.3e-28 130.2 718 22.4
PSO210G6104 Papaver somniferum HOM05D002925 ORTHO05D003247 2.6e-27 127.9 164 42.7
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 3.4e-27 127.5 190 38.9
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 4.5e-27 127.1 237 37.1
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 7.6e-27 126.3 228 36.0
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 7.6e-27 126.3 181 40.3
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 1.0e-26 125.9 321 31.5
SalBow7G1697 Salvia bowleyana HOM05D002925 ORTHO05D003247 1.0e-26 125.9 529 25.5
SGA_v2.0_scaffold74G24580 Striga asiatica HOM05D002925 ORTHO05D003247 1.7e-26 125.2 178 40.4
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.9e-26 123.6 231 33.8
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 6.5e-26 123.2 239 36.4
CSS0008363 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 8.4e-26 122.9 138 49.3
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 5.5e-25 120.2 471 27.2
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 7.1e-25 119.8 234 30.8
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 2.7e-24 117.9 350 30.9
Solyc04g074250.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 3.5e-24 117.5 350 30.9
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.6e-24 117.1 334 29.9
Potri.002G097700 Populus trichocarpa HOM05D002925 ORTHO05D003247 6.0e-24 116.7 209 33.5
Duzib093G1387 Durio zibethinus HOM05D002925 ORTHO05D003247 7.9e-24 116.3 228 31.1
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 1.0e-23 115.9 336 29.5
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 1.3e-23 115.5 400 28.8
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 3.0e-23 114.4 478 27.0
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 3.9e-23 114.0 797 21.6
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 5.1e-23 113.6 261 32.2
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 1.3e-21 109.0 235 32.8
DCAR_008741 Daucus carota HOM05D002925 ORTHO05D003247 1.6e-21 108.6 195 33.3
CAN.G193.33 Capsicum annuum HOM05D002925 ORTHO05D000105 8.2e-21 106.3 518 24.9
Actinidia33130 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.4e-20 105.5 237 30.4
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 4.5e-19 100.5 198 35.4
Thecc.02G136800 Theobroma cacao HOM05D002925 ORTHO05D003247 6.5e-18 96.7 166 40.4
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 3.2e-17 94.4 167 34.1
Duzib041G0069 Durio zibethinus HOM05D002925 ORTHO05D003247 5.5e-17 93.6 118 38.1
ECA232G4158 Erigeron canadensis HOM05D002925 ORTHO05D003247 3.9e-15 87.4 440 25.5
ATR0782G041 Amborella trichopoda HOM05D002925 ORTHO05D003247 6.7e-15 86.7 96 49.0
HanXRQChr05g0145421 Helianthus annuus HOM05D002925 ORTHO05D003247 1.5e-14 85.5 226 28.3
MD15G1370800 Malus domestica HOM05D002925 ORTHO05D003247 1.9e-14 85.1 155 34.8
Oeu029761.1 Olea europaea HOM05D002925 ORTHO05D003247 7.4e-14 83.2 179 30.2
Zm00001eb033590 Zea mays HOM05D036816 ORTHO05D003247 9.7e-14 82.8 74 45.9
PSO210G0747 Papaver somniferum HOM05D002925 ORTHO05D003247 1.3e-13 82.4 114 38.6
RcHm_v2.0_Chr7g0238671 Rosa chinensis HOM05D002925 ORTHO05D003247 1.3e-13 82.4 210 25.7
RcHm_v2.0_Chr7g0243961 Rosa chinensis HOM05D002925 ORTHO05D003247 1.3e-13 82.4 210 25.7
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.2e-13 81.6 218 28.9
Dinv09024 Davidia involucrata HOM05D002925 ORTHO05D003247 6.3e-13 80.1 72 58.3
Zm00001eb101320 Zea mays HOM05D002925 ORTHO05D003247 6.3e-13 80.1 145 33.8
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 4.1e-12 77.4 219 28.3
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 9.1e-12 76.3 219 28.3
Os09g0473300 Oryza sativa ssp. japonica HOM05D036816 ORTHO05D003247 3.4e-11 74.3 148 31.8
ECA247G0600 Erigeron canadensis HOM05D002925 ORTHO05D003247 1.0e-10 72.8 161 29.8
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.0e-10 72.8 157 29.9
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.2e-10 71.6 359 24.0
unitig_8.g5045 Utricularia gibba HOM05D002925 ORTHO05D003247 5.0e-10 70.5 188 26.1
Os08g0485700 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 7.9e-08 63.2 171 24.6
ECA236G2475 Erigeron canadensis HOM05D002925 ORTHO05D003247 5.1e-07 60.5 77 40.3
HanXRQChr11g0338071 Helianthus annuus HOM05D002925 ORTHO05D003247 6.7e-07 60.1 129 34.1
Zm00001eb199140 Zea mays HOM05D036816 ORTHO05D003247 8.8e-07 59.7 56 50.0
Dinv09023 Davidia involucrata HOM05D002925 ORTHO05D003247 2.0e-06 58.5 74 41.9
HanXRQChr02g0043481 Helianthus annuus HOM05D002925 ORTHO05D003247 2.6e-06 58.2 437 22.4
Os08g0485600 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 3.3e-06 57.8 146 28.1
SGA_v2.0_scaffold74G24575 Striga asiatica HOM05D002925 ORTHO05D003247 9.7e-06 56.2 141 27.7
TPR.G36116 Trifolium pratense HOM05D002925 ORTHO05D003247 9.7e-06 56.2 66 39.4


User provided reference genes

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