Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.5e-104 382.1 190 100.0
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.7e-101 370.9 187 96.3
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.4e-91 339.0 188 87.2
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 5.2e-86 321.2 189 84.1
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 3.4e-85 318.5 186 82.3
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.3e-84 316.6 189 78.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 8.3e-84 313.9 189 78.8
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.4e-83 313.2 188 79.3
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.9e-83 312.8 189 80.4
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.4e-83 312.4 189 78.3
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 5.4e-83 311.2 187 77.0
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 5.4e-83 311.2 189 77.8
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 3.5e-82 308.5 196 76.0
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.6e-82 308.1 196 76.0
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.0e-81 307.0 174 83.9
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.7e-81 306.2 190 79.5
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.3e-81 305.8 189 78.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 3.9e-81 305.1 190 76.8
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 3.9e-81 305.1 189 77.8
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.5e-80 303.1 189 75.7
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.5e-80 303.1 187 77.0
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.5e-80 303.1 176 82.4
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.1e-79 299.3 189 76.2
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.8e-79 298.9 183 77.6
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 6.2e-79 297.7 190 75.8
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 6.2e-79 297.7 175 80.6
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 8.1e-79 297.4 187 76.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 8.1e-79 297.4 190 75.8
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-78 296.6 189 75.1
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.8e-78 296.2 189 74.6
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 6.8e-78 294.3 192 76.0
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.2e-77 293.5 183 75.4
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.5e-77 293.1 187 75.4
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 2.0e-77 292.7 183 75.4
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.0e-77 292.7 176 78.4
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.6e-77 292.4 174 79.3
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 4.4e-77 291.6 189 74.6
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.7e-76 289.7 183 73.8
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 8.3e-76 287.3 189 72.5
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 2.4e-75 285.8 172 79.1
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 5.4e-75 284.6 187 73.8
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 5.4e-75 284.6 183 73.2
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.2e-74 283.5 172 78.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.6e-74 283.1 173 78.0
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.7e-74 282.3 173 78.0
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 4.6e-74 281.6 189 69.8
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 6.0e-74 281.2 186 71.0
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.0e-74 281.2 185 72.4
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 7.8e-74 280.8 187 71.7
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 7.8e-74 280.8 189 70.4
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.0e-73 280.4 173 77.5
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.0e-73 280.4 185 72.4
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.0e-73 280.4 185 72.4
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.7e-73 279.6 186 69.9
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.7e-73 279.6 163 81.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.3e-73 279.3 189 69.3
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 2.3e-73 279.3 189 68.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.0e-73 278.9 186 69.4
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 3.0e-73 278.9 189 68.8
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.0e-73 278.9 189 68.8
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.0e-73 278.9 189 68.3
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 3.0e-73 278.9 174 78.7
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 3.0e-73 278.9 190 71.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 5.1e-73 278.1 189 69.8
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 5.1e-73 278.1 175 76.0
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.1e-72 276.9 186 69.4
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.1e-72 276.9 189 67.7
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.5e-72 275.8 163 79.8
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.3e-72 275.4 173 76.9
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 4.3e-72 275.0 173 73.4
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.3e-72 275.0 173 75.7
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.3e-72 275.0 173 75.7
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.3e-72 275.0 173 75.1
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.6e-72 274.6 189 68.8
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.3e-72 274.2 185 70.8
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-71 273.5 158 83.5
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.2e-71 273.5 179 72.1
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.8e-71 272.3 187 71.7
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.4e-70 270.0 168 75.6
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.3e-70 269.2 170 75.9
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.3e-70 269.2 169 74.6
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.2e-70 268.1 189 68.3
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.5e-69 266.5 183 68.9
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.6e-69 265.8 162 77.2
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.6e-69 265.8 189 68.3
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.3e-68 263.5 173 69.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.3e-68 263.5 186 64.5
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.2e-68 262.7 155 81.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.7e-68 261.9 172 69.2
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 4.9e-68 261.5 174 72.4
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.4e-68 261.2 163 73.0
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.1e-67 260.4 173 74.0
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.1e-67 260.4 163 73.6
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 3.2e-67 258.8 170 72.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 7.1e-67 257.7 176 67.6
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.2e-66 256.9 170 72.4
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.7e-66 255.8 172 72.1
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.6e-66 255.0 176 72.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 6.0e-66 254.6 189 66.1
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.0e-66 254.6 170 69.4
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.3e-65 253.4 170 71.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.7e-65 253.1 169 71.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.0e-65 252.3 163 71.2
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 6.6e-65 251.1 170 70.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-64 250.4 161 72.7
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-64 250.4 161 72.7
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.1e-64 250.4 158 74.1
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.3e-64 248.8 161 74.5
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.1e-62 243.8 158 73.4
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.1e-62 243.8 170 66.5
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.4e-62 243.4 159 73.6
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.8e-62 243.0 170 68.8
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.4e-62 242.7 173 67.1
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.1e-62 242.3 158 69.6
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.1e-62 242.3 160 71.2
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 4.0e-62 241.9 170 65.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.0e-62 241.9 160 71.2
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 5.2e-62 241.5 159 73.0
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 8.9e-62 240.7 160 70.0
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.6e-61 239.2 159 70.4
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.6e-61 239.2 170 66.5
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.7e-60 236.5 174 64.4
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 8.4e-60 234.2 163 68.1
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.9e-59 233.0 170 67.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.9e-59 233.0 160 66.9
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.4e-59 231.5 171 63.7
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.1e-58 229.6 160 69.4
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.1e-58 229.6 159 67.3
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.0e-57 227.3 134 77.6
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 3.0e-57 225.7 134 75.4
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.5e-56 223.4 162 66.0
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.5e-56 223.4 185 60.0
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.6e-55 219.9 177 63.3
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.1e-55 219.5 160 62.5
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.1e-54 217.2 159 64.2
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 5.3e-54 214.9 160 66.2
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.3e-54 214.9 160 66.2
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.0e-54 214.2 160 66.2
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.5e-53 213.4 175 58.9
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.0e-53 213.0 160 65.6
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-53 213.0 151 67.5
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.4e-53 211.8 156 64.1
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.9e-51 206.5 174 61.5
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.4e-51 206.1 159 56.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.2e-50 203.8 163 60.7
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.3e-49 200.3 159 62.9
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.9e-49 198.7 159 57.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 8.7e-49 197.6 157 58.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.1e-48 197.2 129 76.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 5.6e-48 194.9 166 61.4
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 7.3e-48 194.5 156 63.5
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.6e-47 193.4 189 54.5
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.8e-46 189.9 169 58.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.8e-46 189.9 135 70.4
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.0e-46 188.7 162 61.1
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.0e-46 187.6 169 58.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.2e-45 187.2 132 68.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.5e-45 185.3 129 70.5
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.8e-44 182.2 169 53.8
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.9e-44 181.8 159 57.2
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.1e-43 180.6 125 68.0
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 6.0e-42 174.9 142 55.6
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.8e-38 163.3 116 72.4
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.1e-34 149.8 90 78.9
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-33 147.5 97 70.1
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.5e-32 142.9 94 67.0
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.8e-31 139.4 91 68.1
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.4e-30 137.1 93 72.0
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.8e-30 136.7 182 44.5
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.0e-30 134.4 148 43.2
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 8.7e-25 117.9 73 72.6
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.7e-18 96.3 79 59.5
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.0e-17 94.4 69 66.7
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-13 79.0 69 58.0
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.1e-10 68.6 36 77.8
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.0e-09 67.8 36 77.8
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.8e-09 67.0 106 39.6
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 5.1e-09 65.5 175 29.7
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 7.4e-08 61.6 61 50.8
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 4.8e-07 58.9 39 66.7
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 4.8e-07 58.9 32 81.2
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.8e-06 57.0 172 29.1
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 5.3e-06 55.5 32 78.1


User provided reference genes

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