Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 3.5e-97 358.2 173 100.0
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 5.2e-24 115.2 68 83.8
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.0e-23 113.2 68 83.8
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.2e-22 109.8 78 70.5
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 8.2e-22 107.8 82 65.9
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.4e-21 107.1 68 77.9
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.8e-21 106.7 68 75.0
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.8e-21 106.7 68 77.9
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.8e-21 106.7 68 77.9
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.4e-21 106.3 68 76.5
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.1e-21 105.9 68 76.5
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 4.1e-21 105.5 78 67.9
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 5.3e-21 105.1 78 70.5
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 5.3e-21 105.1 68 75.0
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 7.0e-21 104.8 68 76.5
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.2e-20 104.0 70 70.0
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.2e-20 104.0 72 68.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.2e-20 104.0 79 64.6
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.2e-20 104.0 79 64.6
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.2e-20 104.0 71 67.6
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-20 103.6 87 60.9
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.6e-20 103.6 87 60.9
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.6e-20 103.6 68 72.1
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.6e-20 103.6 72 70.8
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 2.0e-20 103.2 68 72.1
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.0e-20 103.2 68 72.1
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 2.6e-20 102.8 87 60.9
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 2.6e-20 102.8 87 60.9
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.6e-20 102.8 68 73.5
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.6e-20 102.8 68 75.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 3.5e-20 102.4 72 66.7
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 3.5e-20 102.4 66 74.2
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 4.5e-20 102.1 68 70.6
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 4.5e-20 102.1 68 75.0
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 4.5e-20 102.1 66 75.8
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 4.5e-20 102.1 83 65.1
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.5e-20 102.1 68 73.5
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.9e-20 101.7 68 75.0
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 5.9e-20 101.7 66 75.8
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.7e-20 101.3 72 65.3
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 7.7e-20 101.3 68 73.5
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.0e-19 100.9 72 66.7
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.0e-19 100.9 68 72.1
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.7e-19 100.1 68 69.1
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.7e-19 100.1 67 71.6
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.7e-19 100.1 68 73.5
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.7e-19 100.1 68 70.6
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.9e-19 99.4 68 72.1
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.9e-19 99.4 88 59.1
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 2.9e-19 99.4 68 70.6
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.9e-19 99.4 88 56.8
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 3.8e-19 99.0 66 71.2
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.8e-19 99.0 68 67.6
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 5.0e-19 98.6 75 68.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 5.0e-19 98.6 67 68.7
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 6.5e-19 98.2 68 66.2
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 6.5e-19 98.2 68 66.2
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 8.5e-19 97.8 68 70.6
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 8.5e-19 97.8 66 69.7
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 8.5e-19 97.8 66 69.7
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-18 97.4 68 69.1
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-18 97.4 68 69.1
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.5e-18 97.1 54 87.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.5e-18 97.1 75 66.7
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.5e-18 97.1 68 63.2
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.5e-18 97.1 72 63.9
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.5e-18 97.1 68 67.6
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.5e-18 97.1 72 65.3
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.9e-18 96.7 72 63.9
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.9e-18 96.7 68 67.6
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.9e-18 96.7 72 61.1
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.5e-18 96.3 75 65.3
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.5e-18 96.3 68 70.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.5e-18 96.3 68 70.6
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 2.5e-18 96.3 68 66.2
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.5e-18 96.3 68 69.1
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 3.2e-18 95.9 68 69.1
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.2e-18 95.9 68 69.1
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 3.2e-18 95.9 67 68.7
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.2e-18 95.5 68 66.2
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 4.2e-18 95.5 68 67.6
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 5.5e-18 95.1 68 66.2
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 5.5e-18 95.1 67 68.7
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 5.5e-18 95.1 68 67.6
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 5.5e-18 95.1 68 67.6
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 7.2e-18 94.7 68 69.1
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 9.4e-18 94.4 72 63.9
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 9.4e-18 94.4 78 61.5
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 9.4e-18 94.4 66 62.1
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 9.4e-18 94.4 88 58.0
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 9.4e-18 94.4 68 61.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.2e-17 94.0 68 63.2
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.2e-17 94.0 68 63.2
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.2e-17 94.0 68 63.2
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.6e-17 93.6 72 61.1
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.6e-17 93.6 75 65.3
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 2.1e-17 93.2 73 65.8
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.7e-17 92.8 63 69.8
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 3.6e-17 92.4 68 61.8
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 4.7e-17 92.0 68 67.6
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 6.1e-17 91.7 72 62.5
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 6.1e-17 91.7 72 63.9
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 8.0e-17 91.3 68 63.2
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.0e-16 90.9 73 64.4
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.4e-16 90.5 66 60.6
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.4e-16 90.5 66 63.6
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.4e-16 90.5 66 63.6
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.4e-16 90.5 68 61.8
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.3e-16 89.7 68 66.2
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.0e-16 89.4 68 63.2
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 4.0e-16 89.0 68 60.3
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 6.8e-16 88.2 68 64.7
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 8.8e-16 87.8 83 53.0
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 1.5e-15 87.0 72 58.3
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.5e-15 87.0 72 58.3
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 2.0e-15 86.7 88 56.8
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.6e-15 86.3 68 57.4
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.6e-15 86.3 66 62.1
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.4e-15 85.9 68 63.2
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 3.4e-15 85.9 68 57.4
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 4.4e-15 85.5 68 61.8
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 5.7e-15 85.1 68 58.8
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.3e-14 84.0 68 61.8
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.3e-14 84.0 73 50.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.2e-14 83.2 73 50.7
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 2.8e-14 82.8 72 54.2
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 6.3e-14 81.6 70 55.7
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 8.3e-14 81.3 65 61.5
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.4e-13 78.6 72 56.9
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 9.1e-13 77.8 73 52.1
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.0e-12 76.6 66 57.6
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 2.0e-12 76.6 66 56.1
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-10 70.9 68 52.9
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 9.4e-10 67.8 68 51.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.7e-09 65.5 73 42.5
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.0e-08 64.3 73 50.7
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.5e-07 60.5 68 48.5
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.5e-07 58.2 83 41.0
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.7e-06 57.0 68 42.6
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.2e-06 56.6 68 41.2


User provided reference genes

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