Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10361 Corylus avellana HOM05D007502 ORTHO05D010230 1.9e-83 312.8 190 100.0
Cfa004764 Carpinus fangiana HOM05D007502 ORTHO05D010230 1.2e-71 273.5 191 86.4
Haze_15266 Corylus avellana HOM05D064528 ORTHO05D043735 2.0e-37 159.8 204 51.0
Cfa004146 Carpinus fangiana HOM05D064528 ORTHO05D043735 3.0e-33 146.0 190 53.2
CiPaw.01G003100 Carya illinoinensis HOM05D007502 ORTHO05D010230 8.7e-33 144.4 183 57.4
QL06p039372 Quercus lobata HOM05D007502 ORTHO05D010230 2.9e-28 129.4 174 56.3
Gorai.007G225000 Gossypium raimondii HOM05D007502 ORTHO05D010230 7.4e-24 114.8 186 53.2
CSS0024819 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 9.7e-24 114.4 186 45.7
RhsimUnG0241800 Rhododendron simsii HOM05D007502 ORTHO05D010230 9.7e-24 114.4 142 52.1
Gohir.D11G209800 Gossypium hirsutum HOM05D007502 ORTHO05D010230 6.3e-23 111.7 186 50.5
Prupe.6G218900 Prunus persica HOM05D007502 ORTHO05D010230 8.2e-23 111.3 164 52.4
Gohir.A11G213400 Gossypium hirsutum HOM05D007502 ORTHO05D010230 1.1e-22 110.9 185 49.7
Ciclev10027603m.g Citrus clementina HOM05D007502 ORTHO05D010230 1.4e-22 110.5 175 52.0
vmacro05426 Vaccinium macrocarpon HOM05D007502 ORTHO05D010230 7.7e-21 104.8 164 45.1
Thecc.01G074400 Theobroma cacao HOM05D007502 ORTHO05D010230 6.5e-20 101.7 182 46.7
Potri.007G006000 Populus trichocarpa HOM05D007502 ORTHO05D010230 2.5e-19 99.8 200 41.5
MD15G1299000 Malus domestica HOM05D007502 ORTHO05D010230 5.5e-19 98.6 164 43.9
Cpa.g.c26343.2 Carica papaya HOM05D007502 ORTHO05D010230 1.2e-18 97.4 186 41.9
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 3.6e-18 95.9 151 47.0
Duzib187G0517 Durio zibethinus HOM05D007502 ORTHO05D010230 7.9e-18 94.7 197 45.2
Actinidia11971 Actinidia chinensis HOM05D007502 ORTHO05D010230 3.0e-17 92.8 133 48.9
TAR628G1349 Trochodendron aralioides HOM05D007502 ORTHO05D010230 8.8e-17 91.3 176 49.4
Cc07_g07260 Coffea canephora HOM05D007502 ORTHO05D010230 2.0e-16 90.1 166 42.8
MSTRG.3478 Avicennia marina HOM05D007502 ORTHO05D010230 4.3e-16 89.0 112 53.6
Peaxi162Scf00548g00223 Petunia axillaris HOM05D007502 ORTHO05D010230 4.3e-16 89.0 131 45.8
Medtr5g015230 Medicago truncatula HOM05D007502 ORTHO05D010230 9.7e-16 87.8 186 37.6
Nitab4.5_0000142g0280 Nicotiana tabacum HOM05D007502 ORTHO05D010230 9.7e-16 87.8 199 41.7
GSVIVG01002329001 Vitis vinifera HOM05D007502 ORTHO05D010230 1.7e-15 87.0 178 43.3
RcHm_v2.0_Chr2g0108411 Rosa chinensis HOM05D007502 ORTHO05D010230 8.2e-15 84.7 168 44.0
Solyc02g092200.3 Solanum lycopersicum HOM05D007502 ORTHO05D010230 3.1e-14 82.8 174 51.1
CSS0004026 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 4.1e-14 82.4 143 46.9
DCAR_025816 Daucus carota HOM05D007502 ORTHO05D010230 4.1e-14 82.4 167 38.9
COL.COLO4_11595 Corchorus olitorius HOM05D007502 ORTHO05D010230 1.5e-13 80.5 184 44.6
Lalb_Chr05g0213781 Lupinus albus HOM05D007502 ORTHO05D010230 1.5e-13 80.5 164 37.2
Eucgr.I00691 Eucalyptus grandis HOM05D007502 ORTHO05D010230 2.6e-13 79.7 176 49.4
Dinv23033 Davidia involucrata HOM05D001896 ORTHO05D001862 7.7e-13 78.2 153 42.5
Sabra07G0004300 Salix brachista HOM05D007502 ORTHO05D010230 3.8e-12 75.9 201 36.3
Phvul.002G009800 Phaseolus vulgaris HOM05D007502 ORTHO05D010230 5.0e-12 75.5 187 35.3
Sopen02g036770 Solanum pennellii HOM05D007502 ORTHO05D010230 1.1e-11 74.3 180 48.9
Lj2g0008607 Lotus japonicus HOM05D007502 ORTHO05D010230 3.2e-11 72.8 106 48.1
Ca_24677_v3 Cicer arietinum L. HOM05D007502 ORTHO05D010230 2.1e-10 70.1 129 38.0
Glyma.11G046600 Glycine max HOM05D007502 ORTHO05D010230 2.1e-10 70.1 166 36.1
arahy.Tifrunner.gnm1.ann1.69I0H7 Arachis hypogaea HOM05D007502 ORTHO05D010230 3.6e-10 69.3 166 36.7
PGSC0003DMG401021412 Solanum tuberosum HOM05D007502 ORTHO05D010230 3.6e-10 69.3 160 45.0
CANSAT01G3167 Cannabis sativa HOM05D007502 ORTHO05D010230 4.7e-10 68.9 180 37.2
Psat2g171920 Pisum sativum HOM05D007502 ORTHO05D010230 6.1e-10 68.6 133 38.3
arahy.Tifrunner.gnm1.ann1.W7GVX2 Arachis hypogaea HOM05D007502 ORTHO05D010230 3.0e-09 66.2 168 39.9
FAN23G3114 Fragaria x ananassa HOM05D007502 ORTHO05D010230 3.0e-09 66.2 127 45.7
Nitab4.5_0003129g0050 Nicotiana tabacum HOM05D007502 ORTHO05D010230 8.8e-09 64.7 77 54.5
SalBow5G4540 Salvia bowleyana HOM05D007502 ORTHO05D010230 1.1e-08 64.3 128 46.9
BraA06t26210Z Brassica rapa HOM05D007502 ORTHO05D011692 2.6e-08 63.2 168 35.7
VMungo1215G1334 Vigna mungo HOM05D007502 ORTHO05D010230 2.6e-08 63.2 209 31.6
C03p59700 Brassica napus HOM05D007502 ORTHO05D011692 3.3e-08 62.8 181 35.4
BolC3t18232H Brassica oleracea HOM05D007502 ORTHO05D011692 3.3e-08 62.8 181 35.4
A06p32780 Brassica napus HOM05D007502 ORTHO05D011692 5.7e-08 62.0 167 40.7
AT5G67640 Arabidopsis thaliana HOM05D007502 ORTHO05D010230 7.4e-08 61.6 194 38.1
Lsat_1_v5_gn_2_82580 Lactuca sativa HOM05D007502 ORTHO05D010230 7.4e-08 61.6 117 44.4
Aqoxy6G02556 Aquilegia oxysepala HOM05D007502 ORTHO05D010230 1.3e-07 60.8 92 48.9
Actinidia36426 Actinidia chinensis HOM05D001896 ORTHO05D001862 1.7e-07 60.5 77 53.2
ECA238G4396 Erigeron canadensis HOM05D007502 ORTHO05D010230 4.8e-07 58.9 88 50.0
AL8G43660 Arabidopsis lyrata HOM05D007502 ORTHO05D010230 8.2e-07 58.2 150 36.7
BcaB02g09909 Brassica carinata HOM05D007502 ORTHO05D010230 8.2e-07 58.2 178 35.4
ATR0739G061 Amborella trichopoda HOM05D007502 ORTHO05D010230 2.4e-06 56.6 104 45.2
CARHR279950 Cardamine hirsuta HOM05D007502 ORTHO05D010230 4.1e-06 55.8 169 35.5
Thhalv10005075m.g Eutrema salsugineum HOM05D007502 ORTHO05D010230 5.3e-06 55.5 110 38.2
FvH4_1g17950 Fragaria vesca HOM05D007502 ORTHO05D010230 5.3e-06 55.5 75 52.0
FAN19G2042 Fragaria x ananassa HOM05D000058 ORTHO05D000255 5.3e-06 55.5 75 52.0


User provided reference genes

Program Settings