Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 2.8e-278 961.4 536 100.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 8.9e-91 338.6 259 78.4
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 1.5e-77 294.7 204 84.8
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.5e-53 214.9 204 69.1
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 6.2e-52 209.5 190 69.5
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 2.4e-51 207.6 190 72.6
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 3.3e-45 187.2 206 56.8
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.1e-44 184.5 212 62.7
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.7e-41 174.9 205 55.1
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.2e-41 174.5 228 53.9
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 3.8e-41 173.7 209 61.7
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.1e-40 172.2 188 63.8
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 4.2e-40 170.2 135 69.6
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.6e-39 168.3 142 66.9
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.1e-39 167.9 143 66.4
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 3.5e-39 167.2 181 64.6
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 6.0e-39 166.4 205 55.6
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 6.0e-39 166.4 236 53.4
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.3e-38 165.2 189 60.3
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.8e-38 164.9 210 60.5
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.7e-38 162.9 140 64.3
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 8.7e-38 162.5 143 65.0
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.1e-37 162.2 185 65.4
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.7e-37 159.8 133 67.7
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 7.4e-37 159.5 140 65.0
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 7.4e-37 159.5 124 70.2
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.3e-36 158.7 205 55.1
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 1.6e-36 158.3 130 68.5
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 2.8e-36 157.5 143 61.5
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 3.7e-36 157.1 134 65.7
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 4.8e-36 156.8 240 51.7
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 6.3e-36 156.4 139 64.7
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.1e-35 155.6 138 63.0
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.1e-35 155.6 136 66.9
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.1e-35 155.6 127 68.5
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.4e-35 155.2 127 66.9
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 1.4e-35 155.2 140 62.1
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 2.4e-35 154.5 205 51.7
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 3.1e-35 154.1 141 64.5
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 6.9e-35 152.9 226 46.9
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.2e-34 152.1 139 64.0
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.5e-34 151.8 143 61.5
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.0e-34 151.4 140 62.9
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.5e-34 150.2 139 62.6
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 4.5e-34 150.2 144 61.8
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 5.9e-34 149.8 129 64.3
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 7.6e-34 149.4 141 59.6
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 1.0e-33 149.1 143 61.5
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.3e-33 148.7 143 60.8
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 1.3e-33 148.7 180 59.4
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 2.2e-33 147.9 145 57.9
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 5.0e-33 146.7 135 60.0
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 6.5e-33 146.4 132 63.6
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.1e-32 145.6 134 59.7
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.1e-32 145.6 143 58.7
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.5e-32 144.4 206 55.8
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 3.2e-32 144.1 134 59.0
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 4.2e-32 143.7 132 62.9
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 5.5e-32 143.3 138 59.4
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 7.2e-32 142.9 142 58.5
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.2e-31 142.1 141 58.9
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 1.2e-31 142.1 141 61.0
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 1.2e-31 142.1 132 62.9
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.1e-31 141.4 137 59.1
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.7e-31 141.0 141 61.0
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.6e-31 140.6 202 46.5
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 4.6e-31 140.2 141 56.0
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 7.9e-31 139.4 134 61.2
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 7.9e-31 139.4 121 65.3
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 7.9e-31 139.4 145 57.9
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 3.0e-30 137.5 149 57.7
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 3.9e-30 137.1 122 63.9
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.1e-29 135.6 134 59.0
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.9e-29 134.8 163 53.4
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.3e-29 133.7 143 57.3
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 9.7e-29 132.5 132 59.1
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 1.3e-28 132.1 131 61.8
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.2e-28 131.3 209 52.6
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 6.3e-28 129.8 141 53.9
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.4e-27 128.6 134 56.0
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.8e-27 128.3 153 54.9
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 2.4e-27 127.9 137 54.7
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 5.3e-27 126.7 192 51.0
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 6.9e-27 126.3 136 55.1
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 9.1e-27 125.9 116 63.8
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.2e-26 125.6 145 56.6
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.5e-26 125.2 138 58.7
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 2.0e-26 124.8 151 55.0
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 3.4e-26 124.0 125 58.4
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 3.4e-26 124.0 136 53.7
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 3.4e-26 124.0 144 55.6
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 5.9e-26 123.2 121 57.9
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.7e-25 121.7 145 51.7
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.8e-25 120.6 145 51.0
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 6.5e-25 119.8 145 53.8
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 6.5e-25 119.8 149 53.7
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.4e-24 118.6 149 53.0
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.9e-24 118.2 128 53.9
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.5e-24 117.9 140 55.7
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 4.7e-23 113.6 131 53.4
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 4.7e-23 113.6 138 48.6
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 7.9e-23 112.8 140 51.4
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.8e-22 111.7 90 68.9
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.1e-21 109.0 132 53.0
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.1e-21 109.0 134 52.2
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.1e-21 109.0 134 52.2
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.1e-21 109.0 134 52.2
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.1e-21 109.0 95 64.2
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.5e-21 108.6 146 47.9
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.6e-21 107.8 143 49.7
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 3.3e-21 107.5 138 49.3
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 3.3e-21 107.5 147 50.3
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 7.4e-21 106.3 139 50.4
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 9.7e-21 105.9 121 53.7
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 9.7e-21 105.9 139 50.4
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 1.3e-20 105.5 129 50.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.3e-20 105.5 147 49.0
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 4.8e-20 103.6 195 48.2
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 2.4e-19 101.3 144 47.9
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.1e-19 100.9 86 65.1
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 3.1e-19 100.9 144 49.3
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 4.1e-19 100.5 123 51.2
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 4.1e-19 100.5 123 51.2
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 5.3e-19 100.1 121 52.9
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 6.9e-19 99.8 125 50.4
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 9.1e-19 99.4 151 47.0
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.5e-18 98.6 122 50.8
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.5e-18 98.6 74 70.3
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 2.0e-18 98.2 145 46.9
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.6e-18 97.8 91 62.6
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 7.7e-18 96.3 126 49.2
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 2.2e-17 94.7 142 45.1
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 2.2e-17 94.7 142 45.1
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.9e-17 94.4 148 42.6
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.8e-17 94.0 83 65.1
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 3.8e-17 94.0 82 63.4
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 8.5e-17 92.8 142 44.4
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.2e-15 89.0 184 40.2
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 3.6e-15 87.4 59 81.4
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 4.4e-13 80.5 79 59.5
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 4.4e-13 80.5 63 66.7
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.7e-12 77.4 61 68.9
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 2.4e-11 74.7 142 41.5
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.1e-11 73.9 60 68.3
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 5.3e-11 73.6 67 61.2
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 7.0e-11 73.2 123 43.1
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 7.7e-10 69.7 44 79.5
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 7.2e-08 63.2 62 56.5
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 9.4e-08 62.8 90 45.6
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 8.0e-07 59.7 44 70.5
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 5.2e-06 57.0 94 41.5


User provided reference genes

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