Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10318 Corylus avellana HOM05D002370 ORTHO05D003878 2.4e-126 455.7 260 100.0
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.3e-74 283.9 152 95.4
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.8e-73 280.0 152 93.4
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 1.1e-70 270.8 152 91.4
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.4e-70 270.4 152 90.8
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.4e-70 270.4 152 90.8
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 2.5e-70 269.6 152 88.8
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 5.5e-70 268.5 152 90.8
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 5.5e-70 268.5 152 90.8
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 9.3e-70 267.7 152 90.1
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 9.3e-70 267.7 152 88.8
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 1.2e-69 267.3 152 88.8
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.2e-69 267.3 152 88.8
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.2e-69 267.3 152 88.8
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 1.2e-69 267.3 152 90.8
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 2.1e-69 266.5 152 90.8
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 2.1e-69 266.5 152 89.5
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.7e-69 266.2 152 90.8
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 2.7e-69 266.2 152 90.1
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 2.7e-69 266.2 152 87.5
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 3.6e-69 265.8 153 88.9
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 3.6e-69 265.8 152 88.2
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 6.1e-69 265.0 152 89.5
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 6.1e-69 265.0 152 88.8
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 6.1e-69 265.0 152 88.8
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 7.9e-69 264.6 152 88.8
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 7.9e-69 264.6 152 90.1
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 7.9e-69 264.6 152 90.1
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 7.9e-69 264.6 152 88.8
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 7.9e-69 264.6 152 88.8
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 7.9e-69 264.6 152 88.2
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 7.9e-69 264.6 152 88.8
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.3e-68 263.8 152 88.2
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 1.8e-68 263.5 152 89.5
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 1.8e-68 263.5 152 89.5
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 1.8e-68 263.5 152 88.2
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.8e-68 263.5 152 86.8
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.8e-68 263.5 152 88.2
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 1.8e-68 263.5 152 90.1
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.3e-68 263.1 152 88.2
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.3e-68 263.1 152 88.8
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 2.3e-68 263.1 152 88.8
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 3.9e-68 262.3 152 88.8
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 3.9e-68 262.3 152 88.8
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 3.9e-68 262.3 152 87.5
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 6.7e-68 261.5 152 88.8
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 6.7e-68 261.5 152 88.2
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 6.7e-68 261.5 152 88.2
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 8.7e-68 261.2 152 86.8
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 8.7e-68 261.2 152 86.8
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 8.7e-68 261.2 160 83.8
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 1.1e-67 260.8 152 89.5
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 1.1e-67 260.8 152 86.8
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.1e-67 260.8 152 86.8
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.5e-67 260.4 152 88.2
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 2.5e-67 259.6 152 86.2
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 3.3e-67 259.2 152 85.5
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 3.3e-67 259.2 152 85.5
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 3.3e-67 259.2 177 77.4
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 4.3e-67 258.8 152 84.9
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 4.3e-67 258.8 152 87.5
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 7.4e-67 258.1 152 85.5
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 7.4e-67 258.1 152 85.5
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 7.4e-67 258.1 152 85.5
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 7.4e-67 258.1 152 85.5
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 7.4e-67 258.1 152 85.5
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 9.7e-67 257.7 161 83.2
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 1.3e-66 257.3 152 85.5
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 1.3e-66 257.3 152 85.5
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 1.3e-66 257.3 157 82.8
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 1.3e-66 257.3 152 89.5
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 1.3e-66 257.3 152 85.5
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 1.7e-66 256.9 152 84.9
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 1.7e-66 256.9 152 88.8
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 1.7e-66 256.9 152 85.5
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 2.2e-66 256.5 152 86.8
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 2.2e-66 256.5 152 83.6
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 2.8e-66 256.1 152 86.2
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 2.8e-66 256.1 152 84.9
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 3.7e-66 255.8 152 88.8
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 3.7e-66 255.8 152 88.2
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 3.7e-66 255.8 152 85.5
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 4.8e-66 255.4 152 84.9
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 4.8e-66 255.4 152 84.2
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.1e-65 254.2 152 86.2
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 1.4e-65 253.8 152 82.9
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 2.4e-65 253.1 152 84.9
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 2.4e-65 253.1 152 84.9
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 2.4e-65 253.1 152 84.9
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 2.4e-65 253.1 170 77.1
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 3.1e-65 252.7 152 85.5
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 3.1e-65 252.7 152 85.5
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 3.1e-65 252.7 152 85.5
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 4.1e-65 252.3 152 87.5
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 6.9e-65 251.5 152 85.5
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 6.9e-65 251.5 153 86.3
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 9.1e-65 251.1 179 76.5
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 1.2e-64 250.8 152 86.8
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 1.5e-64 250.4 153 86.3
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 1.5e-64 250.4 152 84.9
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 1.5e-64 250.4 152 83.6
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 4.5e-64 248.8 153 85.0
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 5.9e-64 248.4 152 85.5
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 5.9e-64 248.4 152 84.2
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 7.7e-64 248.1 152 80.9
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 7.7e-64 248.1 152 86.2
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 1.0e-63 247.7 153 85.0
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.7e-63 246.9 157 80.9
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 2.9e-63 246.1 152 82.2
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 8.5e-63 244.6 152 80.3
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 8.5e-63 244.6 152 80.3
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 1.1e-62 244.2 164 76.8
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 1.4e-62 243.8 152 80.3
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.2e-61 240.7 152 78.9
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 3.0e-60 236.1 152 80.3
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 3.0e-60 236.1 152 75.7
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 6.7e-60 235.0 142 85.2
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.4e-57 226.5 152 75.7
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 6.9e-57 224.9 152 75.0
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 6.5e-55 218.4 152 74.3
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 5.2e-52 208.8 152 70.4
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 8.5e-47 191.4 152 64.5
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 1.1e-46 191.0 152 62.5
Hma1.2p1_1758F.1_g301190 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.5e-46 190.7 116 85.3
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 9.4e-46 188.0 152 63.8
QL06p036987 Quercus lobata HOM05D002370 ORTHO05D003878 4.0e-44 182.6 111 84.7
QL05p028983 Quercus lobata HOM05D002370 ORTHO05D003878 4.2e-38 162.5 104 79.8
Thhalv10012207m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 4.7e-37 159.1 152 60.5
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 2.8e-29 133.3 161 46.6
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 5.2e-28 129.0 222 39.2
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 2.6e-27 126.7 77 84.4
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 5.4e-25 119.0 162 42.0
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 2.1e-21 107.1 140 42.9
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 2.1e-21 107.1 237 33.3
Lsat_1_v5_gn_4_117661 Lactuca sativa HOM05D000964 ORTHO05D001488 2.8e-21 106.7 77 72.7
MBI03_g18482_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D003878 6.8e-20 102.1 62 85.5
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 1.7e-18 97.4 152 34.9
MBI11_g41494_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D012924 3.1e-12 76.6 42 88.1
MBI08_g05568_MAGBIO Magnolia biondii HOM05D001673 ORTHO05D012924 1.2e-11 74.7 42 85.7
MBI18_g33401_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 1.2e-11 74.7 40 90.0
MBI04_g33444_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 1.5e-11 74.3 40 90.0
MBI03_g18483_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 2.0e-11 73.9 40 90.0
MBI19_g14019_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D003878 9.8e-11 71.6 40 85.0
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.7e-10 70.9 40 90.0
MBI04_g11121_MAGBIO Magnolia biondii HOM05D001049 ORTHO05D015148 1.7e-10 70.9 40 87.5
Lsat_1_v5_gn_7_60880 Lactuca sativa HOM05D002313 ORTHO05D229995 1.1e-06 58.2 40 70.0


User provided reference genes

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