Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 5.2e-25 117.1 66 100.0
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.1e-22 109.4 66 89.4
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.6e-21 105.5 66 86.4
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.6e-21 105.5 66 86.4
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 4.5e-21 104.0 66 86.4
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 4.5e-21 104.0 66 89.4
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.3e-20 102.4 66 87.9
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.3e-20 102.4 66 87.9
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 1.3e-20 102.4 62 87.1
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.3e-20 102.4 64 85.9
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.7e-20 102.1 68 85.3
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 2.9e-20 101.3 64 84.4
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.9e-20 101.3 66 81.8
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.9e-20 101.3 66 84.8
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.6e-20 100.1 67 85.1
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.6e-20 100.1 67 85.1
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.6e-20 100.1 66 83.3
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 8.6e-20 99.8 64 82.8
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 8.6e-20 99.8 64 82.8
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 8.6e-20 99.8 61 91.8
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.1e-19 99.4 68 83.8
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.1e-19 99.4 67 83.6
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.1e-19 99.4 66 81.8
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.5e-19 99.0 66 81.8
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.5e-19 99.0 64 87.5
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-19 99.0 66 87.9
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.9e-19 98.6 63 82.5
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.9e-19 98.6 66 80.3
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.9e-19 98.6 66 81.8
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.3e-19 97.8 67 82.1
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.2e-19 97.4 66 83.3
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 5.5e-19 97.1 67 80.6
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 7.2e-19 96.7 71 77.5
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 7.2e-19 96.7 71 77.5
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 7.2e-19 96.7 67 83.6
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 9.5e-19 96.3 64 84.4
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 1.2e-18 95.9 66 81.8
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.2e-18 95.9 66 81.8
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.2e-18 95.9 66 81.8
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.2e-18 95.9 66 80.3
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.6e-18 95.5 66 80.3
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 2.1e-18 95.1 67 82.1
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 2.1e-18 95.1 66 80.3
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.1e-18 95.1 66 81.8
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 2.8e-18 94.7 66 80.3
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 4.7e-18 94.0 70 82.9
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 4.7e-18 94.0 67 80.6
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 6.1e-18 93.6 66 80.3
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 8.0e-18 93.2 66 81.8
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 8.0e-18 93.2 65 81.5
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 8.0e-18 93.2 65 81.5
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.0e-17 92.8 65 80.0
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.0e-17 92.8 66 81.8
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.4e-17 92.4 68 82.4
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.4e-17 92.4 66 81.8
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.8e-17 92.0 64 79.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.3e-17 91.7 64 81.2
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.0e-17 91.3 66 80.3
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 3.0e-17 91.3 66 80.3
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 2.6e-16 88.2 65 75.4
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 2.6e-16 88.2 61 80.3
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 2.6e-16 88.2 66 75.8
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 3.4e-16 87.8 66 69.7
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 5.7e-16 87.0 61 78.7
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.5e-16 86.7 66 74.2
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 9.8e-16 86.3 65 73.8
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.7e-15 85.5 64 73.4
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 2.8e-15 84.7 64 73.4
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 3.7e-15 84.3 62 75.8
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 6.3e-15 83.6 63 69.8
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 6.3e-15 83.6 63 69.8
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 6.3e-15 83.6 61 77.0
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 8.3e-15 83.2 66 74.2
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 8.3e-15 83.2 67 70.1
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 8.3e-15 83.2 70 71.4
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 1.8e-14 82.0 64 68.8
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 1.8e-14 82.0 64 68.8
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.8e-14 82.0 67 73.1
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 2.4e-14 81.6 64 68.8
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 2.4e-14 81.6 64 68.8
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 2.4e-14 81.6 64 68.8
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 2.4e-14 81.6 68 67.6
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 3.1e-14 81.3 64 70.3
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 4.1e-14 80.9 60 78.3
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 4.1e-14 80.9 61 65.6
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 4.1e-14 80.9 61 65.6
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 4.1e-14 80.9 64 70.3
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 7.0e-14 80.1 58 81.0
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 1.2e-13 79.3 77 70.1
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 1.6e-13 79.0 65 67.7
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 2.7e-13 78.2 64 68.8
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 3.5e-13 77.8 59 78.0
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.0e-12 76.3 64 68.8
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.3e-12 75.9 59 74.6
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.3e-12 75.1 55 80.0
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.0e-12 73.9 52 82.7
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 7.3e-11 70.1 57 71.9
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.0e-09 66.2 63 61.9
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.8e-09 65.5 59 61.0
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.3e-09 65.1 61 60.7
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.3e-09 65.1 61 60.7
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 3.1e-09 64.7 61 60.7
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 3.1e-09 64.7 61 59.0
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 3.1e-09 64.7 60 60.0
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.0e-09 64.3 59 62.7
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 4.0e-09 64.3 59 64.4
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 5.2e-09 63.9 61 60.7
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.2e-09 63.9 59 61.0
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 6.8e-09 63.5 76 55.3
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 6.8e-09 63.5 61 59.0
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 6.8e-09 63.5 63 58.7
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 8.9e-09 63.2 62 62.9
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.2e-08 62.8 62 64.5
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-08 62.4 63 58.7
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.5e-08 62.4 59 61.0
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-08 62.4 55 65.5
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.0e-08 62.0 53 66.0
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.0e-08 62.0 59 62.7
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.6e-08 61.6 45 80.0
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.4e-08 61.2 59 61.0
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.4e-08 61.2 59 61.0
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 3.4e-08 61.2 59 59.3
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 3.4e-08 61.2 60 56.7
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.8e-08 59.7 55 61.8
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 1.7e-07 58.9 60 53.3
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 1.7e-07 58.9 61 57.4
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.7e-07 58.9 55 58.2
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 2.9e-07 58.2 61 50.8
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 2.9e-07 58.2 53 60.4
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.9e-07 58.2 55 58.2
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 2.9e-07 58.2 52 63.5
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.7e-07 57.8 62 53.2
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.7e-07 57.8 65 55.4
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.7e-07 57.8 65 55.4
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 4.9e-07 57.4 61 50.8
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 4.9e-07 57.4 62 53.2
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 6.4e-07 57.0 61 59.0
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 6.4e-07 57.0 61 59.0
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.4e-07 57.0 60 58.3
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 63 50.8
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.4e-06 55.8 57 56.1
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.9e-06 55.5 74 50.0
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.9e-06 55.5 55 60.0
C01p44470 Brassica napus HOM05D001568 ORTHO05D004404 2.4e-06 55.1 39 74.4
BolC1t04412H Brassica oleracea HOM05D001568 ORTHO05D004404 2.4e-06 55.1 39 74.4
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.4e-06 55.1 59 55.9
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.2e-06 54.7 65 52.3
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.2e-06 54.7 65 52.3
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 58 56.9
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 58 56.9
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 58 56.9
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 4.1e-06 54.3 61 50.8
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 7.0e-06 53.5 58 55.2
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 9.2e-06 53.1 58 56.9
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 9.2e-06 53.1 58 56.9


User provided reference genes

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