Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 3.9e-56 221.1 102 100.0
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 5.2e-40 167.5 101 79.2
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.2e-38 162.2 102 79.4
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 1.1e-26 123.2 94 64.9
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 1.4e-21 106.3 101 52.5
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.4e-21 105.5 97 52.6
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 3.1e-21 105.1 96 53.1
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.4e-21 104.4 103 50.5
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 1.6e-20 102.8 99 47.5
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.6e-20 102.8 104 53.8
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.7e-20 102.1 97 50.5
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 5.9e-20 100.9 108 54.6
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.0e-19 100.1 103 48.5
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 2.3e-19 99.0 108 43.5
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 2.9e-19 98.6 101 49.5
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 3.8e-19 98.2 98 54.1
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 8.6e-19 97.1 98 53.1
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.9e-18 95.9 104 48.1
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 3.3e-18 95.1 92 52.2
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 3.3e-18 95.1 92 52.2
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 3.3e-18 95.1 125 47.2
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 3.3e-18 95.1 90 46.7
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 4.3e-18 94.7 77 53.2
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 7.3e-18 94.0 89 50.6
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.2e-17 93.2 64 65.6
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.1e-17 92.4 102 47.1
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 2.8e-17 92.0 101 44.6
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 2.8e-17 92.0 108 45.4
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 3.6e-17 91.7 88 53.4
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 3.6e-17 91.7 91 47.3
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 4.7e-17 91.3 105 47.6
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 6.1e-17 90.9 98 43.9
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 1.0e-16 90.1 91 48.4
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.4e-16 89.7 91 45.1
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.8e-16 89.4 91 51.6
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.8e-16 89.4 61 60.7
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.8e-16 89.4 82 51.2
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 3.0e-16 88.6 106 40.6
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 4.0e-16 88.2 111 49.5
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 4.0e-16 88.2 111 49.5
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 4.0e-16 88.2 100 49.0
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 5.2e-16 87.8 100 44.0
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 5.2e-16 87.8 111 49.5
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 5.2e-16 87.8 59 61.0
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 5.2e-16 87.8 96 51.0
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 8.9e-16 87.0 92 52.2
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.5e-15 86.3 96 41.7
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 2.0e-15 85.9 97 47.4
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.4e-15 85.1 61 57.4
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 5.8e-15 84.3 105 45.7
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 5.8e-15 84.3 99 51.5
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 5.8e-15 84.3 82 50.0
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 7.5e-15 84.0 103 46.6
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.5e-15 84.0 52 65.4
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 1.3e-14 83.2 47 70.2
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.3e-14 83.2 56 64.3
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 1.3e-14 83.2 90 45.6
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 1.7e-14 82.8 94 43.6
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 2.2e-14 82.4 47 66.0
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 2.2e-14 82.4 47 66.0
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 2.2e-14 82.4 47 66.0
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 2.2e-14 82.4 47 66.0
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 2.2e-14 82.4 47 66.0
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 2.9e-14 82.0 92 41.3
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 2.9e-14 82.0 90 45.6
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 2.9e-14 82.0 105 44.8
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 2.9e-14 82.0 79 48.1
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 6.4e-14 80.9 47 63.8
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 6.4e-14 80.9 107 45.8
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 6.4e-14 80.9 84 46.4
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 1.4e-13 79.7 105 44.8
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 1.4e-13 79.7 97 39.2
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.8e-13 79.3 103 43.7
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 3.2e-13 78.6 47 66.0
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 3.2e-13 78.6 103 41.7
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 4.1e-13 78.2 83 50.6
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.1e-13 78.2 47 66.0
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 4.1e-13 78.2 99 43.4
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 5.4e-13 77.8 97 39.2
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 5.4e-13 77.8 98 42.9
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 7.0e-13 77.4 103 39.8
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 9.2e-13 77.0 65 53.8
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.2e-12 76.6 109 44.0
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.2e-12 76.6 54 51.9
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.2e-12 76.6 45 62.2
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.6e-12 76.3 104 43.3
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 2.0e-12 75.9 67 53.7
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 3.5e-12 75.1 46 65.2
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 3.5e-12 75.1 46 65.2
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 4.6e-12 74.7 94 39.4
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 7.8e-12 73.9 68 47.1
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 1.0e-11 73.6 75 42.7
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 1.3e-11 73.2 47 61.7
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 1.7e-11 72.8 47 61.7
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 1.7e-11 72.8 47 61.7
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.3e-11 72.4 60 50.0
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 2.3e-11 72.4 47 61.7
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 3.9e-11 71.6 44 54.5
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 5.0e-11 71.2 50 58.0
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 6.6e-11 70.9 47 59.6
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 6.6e-11 70.9 74 52.7
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 8.6e-11 70.5 60 51.7
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 1.1e-10 70.1 53 56.6
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.1e-10 70.1 92 39.1
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 1.5e-10 69.7 96 37.5
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 1.9e-10 69.3 96 35.4
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.9e-10 69.3 72 47.2
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 2.5e-10 68.9 97 39.2
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 4.3e-10 68.2 99 33.3
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 4.3e-10 68.2 91 37.4
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 5.6e-10 67.8 46 56.5
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 7.3e-10 67.4 41 58.5
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 1.2e-09 66.6 57 47.4
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 1.6e-09 66.2 46 54.3
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.8e-08 62.8 64 42.2
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.8e-08 62.8 99 36.4
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 5.2e-08 61.2 45 51.1
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 6.8e-08 60.8 64 39.1
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 6.8e-08 60.8 39 53.8
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 8.9e-08 60.5 40 50.0
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 8.9e-08 60.5 100 35.0
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.2e-07 60.1 67 40.3
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.5e-07 59.7 51 45.1
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.5e-07 59.7 40 50.0
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 4.4e-07 58.2 98 33.7
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 4.4e-07 58.2 45 48.9
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 7.5e-07 57.4 68 39.7
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 2.2e-06 55.8 66 36.4
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 2.2e-06 55.8 35 51.4
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 3.7e-06 55.1 68 42.6


User provided reference genes

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