Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 1.4e-101 372.9 181 100.0
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 9.4e-69 263.8 158 85.4
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 2.2e-65 252.7 161 82.0
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.1e-29 134.0 313 34.2
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 1.2e-26 124.0 85 71.8
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.2e-25 119.8 86 61.6
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 4.9e-25 118.6 85 67.1
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 1.9e-24 116.7 110 53.6
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.9e-24 116.7 120 50.0
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 3.2e-24 115.9 114 52.6
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 3.2e-24 115.9 94 56.4
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 4.1e-24 115.5 120 49.2
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 5.4e-24 115.2 89 56.2
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 5.4e-24 115.2 127 46.5
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 5.4e-24 115.2 87 64.4
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 7.0e-24 114.8 88 60.2
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 7.0e-24 114.8 98 58.2
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 7.0e-24 114.8 103 56.3
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 9.2e-24 114.4 138 47.1
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 9.2e-24 114.4 121 50.4
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 9.2e-24 114.4 121 50.4
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 9.2e-24 114.4 121 50.4
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 9.2e-24 114.4 121 50.4
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.6e-23 113.6 98 57.1
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 3.5e-23 112.5 85 56.5
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 3.5e-23 112.5 121 49.6
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 4.6e-23 112.1 115 47.8
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 4.6e-23 112.1 87 60.9
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 1.0e-22 110.9 88 62.5
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 1.0e-22 110.9 130 49.2
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 1.3e-22 110.5 86 57.0
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 1.3e-22 110.5 142 47.2
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.9e-22 109.0 115 47.0
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 3.9e-22 109.0 127 45.7
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 3.9e-22 109.0 86 57.0
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 6.6e-22 108.2 85 56.5
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 6.6e-22 108.2 89 57.3
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 6.6e-22 108.2 102 49.0
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 8.6e-22 107.8 86 58.1
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 8.6e-22 107.8 127 45.7
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 8.6e-22 107.8 141 46.1
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.5e-21 107.1 87 56.3
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.9e-21 106.7 87 56.3
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 3.3e-21 105.9 87 57.5
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 4.3e-21 105.5 86 51.2
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 7.3e-21 104.8 93 53.8
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 7.3e-21 104.8 99 50.5
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 9.5e-21 104.4 82 58.5
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 9.5e-21 104.4 100 50.0
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 9.5e-21 104.4 103 50.5
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 9.5e-21 104.4 94 53.2
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 9.5e-21 104.4 92 53.3
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.2e-20 104.0 90 54.4
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 1.6e-20 103.6 86 55.8
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 2.1e-20 103.2 85 57.6
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 2.1e-20 103.2 67 70.1
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 2.8e-20 102.8 90 56.7
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 4.7e-20 102.1 67 68.7
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.2e-20 101.7 95 51.6
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.2e-20 101.7 95 51.6
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 8.1e-20 101.3 89 53.9
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 8.1e-20 101.3 86 52.3
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 8.1e-20 101.3 103 49.5
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 1.1e-19 100.9 92 52.2
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 1.1e-19 100.9 92 52.2
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.1e-19 100.9 89 55.1
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 1.4e-19 100.5 87 55.2
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 1.4e-19 100.5 86 54.7
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.4e-19 100.5 85 57.6
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 1.8e-19 100.1 86 54.7
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.8e-19 100.1 94 53.2
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 1.8e-19 100.1 87 54.0
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 1.8e-19 100.1 87 54.0
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 2.3e-19 99.8 88 51.1
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.3e-19 99.8 65 67.7
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 3.1e-19 99.4 87 55.2
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 4.0e-19 99.0 91 56.0
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 4.0e-19 99.0 85 54.1
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 5.2e-19 98.6 65 69.2
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 5.2e-19 98.6 82 56.1
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 6.8e-19 98.2 87 52.9
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 6.8e-19 98.2 87 51.7
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 6.8e-19 98.2 87 52.9
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 8.9e-19 97.8 86 52.3
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 8.9e-19 97.8 87 54.0
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.2e-18 97.4 87 48.3
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.2e-18 97.4 88 48.9
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 2.0e-18 96.7 82 57.3
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.0e-18 96.7 89 50.6
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 2.0e-18 96.7 100 49.0
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 2.6e-18 96.3 88 51.1
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 3.4e-18 95.9 65 67.7
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 4.4e-18 95.5 86 51.2
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.4e-18 95.5 96 52.1
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 5.8e-18 95.1 152 39.5
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 7.5e-18 94.7 65 64.6
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 9.9e-18 94.4 65 60.0
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 9.9e-18 94.4 91 51.6
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 9.9e-18 94.4 85 54.1
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.3e-17 94.0 85 55.3
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.3e-17 94.0 64 65.6
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 1.7e-17 93.6 86 53.5
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 1.7e-17 93.6 86 53.5
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 1.7e-17 93.6 65 63.1
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.7e-17 93.6 152 38.8
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.2e-17 93.2 97 47.4
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 2.2e-17 93.2 98 52.0
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.2e-17 93.2 146 39.7
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 2.9e-17 92.8 96 49.0
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 3.7e-17 92.4 85 54.1
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 3.7e-17 92.4 83 53.0
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 8.3e-17 91.3 92 47.8
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 1.1e-16 90.9 85 56.5
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 1.1e-16 90.9 65 64.6
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 1.1e-16 90.9 63 61.9
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 1.1e-16 90.9 90 51.1
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.4e-16 90.5 118 43.2
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 1.4e-16 90.5 115 38.3
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 1.9e-16 90.1 229 34.9
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 2.4e-16 89.7 87 48.3
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 2.4e-16 89.7 122 38.5
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 3.2e-16 89.4 65 63.1
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 3.2e-16 89.4 65 63.1
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 3.2e-16 89.4 67 62.7
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 4.1e-16 89.0 83 53.0
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.1e-16 89.0 81 50.6
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 4.1e-16 89.0 97 47.4
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 5.4e-16 88.6 67 58.2
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 5.4e-16 88.6 87 48.3
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 9.2e-16 87.8 94 48.9
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 9.2e-16 87.8 92 47.8
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.6e-15 87.0 87 49.4
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.6e-15 87.0 85 47.1
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 2.1e-15 86.7 83 50.6
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 2.1e-15 86.7 94 48.9
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 2.7e-15 86.3 84 52.4
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 3.5e-15 85.9 86 50.0
Actinidia02442 Actinidia chinensis HOM05D003497 ORTHO05D003964 1.3e-14 84.0 76 53.9
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 1.3e-14 84.0 64 57.8
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 1.3e-14 84.0 92 43.5
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 1.7e-14 83.6 101 44.6
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.0e-14 82.8 83 54.2
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 8.6e-14 81.3 83 53.0
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 1.1e-13 80.9 89 50.6
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.5e-13 80.5 81 50.6
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 1.9e-13 80.1 125 39.2
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.6e-13 78.6 55 67.3
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 5.6e-13 78.6 90 44.4
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 5.6e-13 78.6 87 43.7
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 5.6e-13 78.6 87 43.7
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 5.6e-13 78.6 87 43.7
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 5.6e-13 78.6 81 48.1
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 5.6e-13 78.6 76 52.6
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 1.6e-12 77.0 98 42.9
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 2.1e-12 76.6 60 56.7
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 2.8e-12 76.3 82 46.3
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 2.4e-11 73.2 80 41.2
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 3.1e-11 72.8 102 45.1
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 4.0e-11 72.4 82 48.8
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 5.2e-11 72.0 51 64.7
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 1.2e-10 70.9 70 52.9
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.4e-10 68.9 63 46.0
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 4.4e-10 68.9 88 39.8
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 5.8e-10 68.6 51 56.9
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 1.7e-09 67.0 65 49.2
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 2.2e-09 66.6 76 42.1
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 2.9e-09 66.2 74 44.6
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 3.8e-09 65.9 81 39.5
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 6.4e-09 65.1 63 46.0
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 8.4e-09 64.7 61 52.5
FvH4_4g04631 Fragaria vesca HOM05D003497 ORTHO05D003964 1.4e-08 63.9 74 44.6
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 1.4e-08 63.9 64 46.9
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 1.4e-08 63.9 64 45.3
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 9.3e-08 61.2 66 48.5
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 9.3e-08 61.2 145 32.4
Cfa010702 Carpinus fangiana HOM05D000090 ORTHO05D017789 1.6e-07 60.5 36 86.1
Zm00001eb051260 Zea mays HOM05D028645 ORTHO05D030730 1.0e-06 57.8 60 43.3
Zm00001eb197560 Zea mays HOM05D028645 ORTHO05D030730 1.0e-06 57.8 60 43.3
Zm00001eb313830 Zea mays HOM05D028645 ORTHO05D030730 1.0e-06 57.8 60 43.3
Zm00001eb293930 Zea mays HOM05D028645 ORTHO05D030730 3.0e-06 56.2 42 54.8


User provided reference genes

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