Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 0.0e+00 1293.1 689 100.0
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 0.0e+00 1114.8 658 92.4
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 3.5e-233 812.0 658 69.1
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 4.6e-233 811.6 658 68.7
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 1.9e-223 779.6 656 67.1
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 1.5e-220 770.0 656 67.5
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 3.1e-213 745.7 651 65.0
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.9e-212 741.5 661 64.3
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 7.6e-212 741.1 656 63.4
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.0e-211 740.7 659 64.2
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.3e-211 740.3 661 64.3
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 1.7e-211 740.0 660 65.3
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.4e-210 736.9 659 63.9
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 7.9e-209 731.1 655 64.6
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 8.7e-208 727.6 654 63.1
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 4.3e-207 725.3 688 60.0
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 8.2e-206 721.1 653 63.7
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.1e-205 720.7 661 62.5
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 3.1e-205 719.2 525 75.4
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 3.4e-204 715.7 654 62.7
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 4.5e-204 715.3 655 62.1
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.0e-203 714.1 715 58.2
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 3.8e-203 712.2 648 63.6
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 5.0e-203 711.8 655 62.0
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 5.1e-200 701.8 635 63.5
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 4.3e-199 698.7 652 59.7
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 2.8e-198 696.0 646 61.9
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 6.3e-198 694.9 682 60.4
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 1.5e-196 690.3 635 62.8
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.5e-196 690.3 660 60.6
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 6.5e-195 684.9 652 61.8
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 1.9e-194 683.3 648 61.0
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 3.2e-194 682.6 654 61.0
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 7.2e-194 681.4 649 59.9
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.6e-193 680.2 670 60.1
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 2.7e-193 679.5 648 61.1
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 4.7e-193 678.7 679 58.6
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 6.1e-193 678.3 679 58.6
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 2.3e-192 676.4 643 61.1
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 1.7e-190 670.2 663 59.0
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.8e-190 669.5 797 51.4
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 2.9e-187 659.4 620 61.0
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.0e-184 651.0 635 59.2
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 1.8e-184 650.2 648 60.2
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 6.7e-184 648.3 649 58.9
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 2.6e-183 646.4 648 59.4
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 5.7e-183 645.2 648 57.1
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 3.5e-180 636.0 678 57.4
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 2.9e-179 632.9 665 55.6
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 1.1e-178 630.9 639 59.0
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 2.2e-174 616.7 664 56.5
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 2.8e-174 616.3 757 51.7
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 1.1e-173 614.4 650 55.2
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 1.4e-173 614.0 650 55.1
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 4.1e-173 612.5 650 55.1
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 1.7e-171 607.1 652 54.6
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 2.2e-171 606.7 660 56.1
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 2.9e-171 606.3 608 58.9
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 2.8e-169 599.7 656 54.3
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 6.3e-166 588.6 617 55.9
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 5.9e-164 582.0 646 53.4
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 1.0e-163 581.3 647 53.3
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 2.5e-162 576.6 603 55.9
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 3.3e-162 576.2 647 52.9
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 5.6e-162 575.5 688 49.9
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 6.8e-160 568.5 690 50.1
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 4.4e-159 565.8 658 53.3
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 2.4e-157 560.1 674 50.7
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 3.2e-157 559.7 647 52.6
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 9.2e-157 558.1 661 53.4
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 2.7e-156 556.6 646 52.2
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 2.7e-156 556.6 646 51.7
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 4.6e-156 555.8 698 49.3
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 1.7e-155 553.9 682 49.7
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 4.7e-153 545.8 706 48.3
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 3.1e-152 543.1 678 49.3
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 3.1e-152 543.1 525 58.5
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 1.9e-146 523.9 668 50.0
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 1.1e-144 518.1 631 49.1
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 3.5e-140 503.1 450 62.7
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 3.3e-138 496.5 655 46.6
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 9.5e-138 495.0 450 63.3
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 8.1e-137 491.9 662 47.6
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 8.9e-136 488.4 657 47.0
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 8.9e-136 488.4 598 49.8
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 9.9e-135 485.0 485 58.6
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 1.7e-131 474.2 483 57.6
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 6.2e-129 465.7 530 54.3
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 2.4e-128 463.8 427 61.8
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.1e-124 450.7 425 60.2
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 7.3e-122 442.2 713 42.9
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 4.5e-119 433.0 653 44.1
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 9.9e-119 431.8 501 52.9
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.7e-118 431.0 666 43.4
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 2.1e-116 424.1 461 55.7
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 3.4e-111 406.8 499 48.7
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 3.4e-111 406.8 634 45.0
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 5.5e-109 399.4 652 42.6
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 6.0e-108 396.0 654 42.2
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 2.9e-102 377.1 656 41.2
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 5.5e-101 372.9 648 41.7
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 3.8e-86 323.6 845 33.7
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.0e-75 288.9 376 52.1
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 2.7e-68 264.2 271 60.1
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 1.8e-67 261.5 333 52.6
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.0e-67 260.8 216 65.3
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 8.2e-65 252.7 518 36.7
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 3.7e-49 200.7 165 68.5
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 2.3e-43 181.4 813 26.8
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 1.5e-42 178.7 312 42.0
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 5.8e-42 176.8 216 50.9
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.3e-41 175.6 150 68.7
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 3.7e-41 174.1 752 28.2
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 8.3e-41 172.9 197 51.3
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 2.1e-36 158.3 153 60.8
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 1.9e-32 145.2 182 46.2
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 3.0e-30 137.9 222 41.9
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 6.8e-27 126.7 101 66.3
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 3.7e-25 120.9 78 78.2
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.6e-18 98.2 120 55.8
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 7.6e-18 96.7 90 66.7
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 9.9e-18 96.3 104 57.7
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 6.4e-17 93.6 227 31.3
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.9e-13 82.0 94 51.1
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 7.3e-13 80.1 52 73.1
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 1.3e-09 69.3 47 74.5
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 6.4e-09 67.0 50 76.0
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 4.2e-08 64.3 88 40.9
SHI04983 Sapria himalayana HOM05D000023 ORTHO05D000014 3.0e-06 58.2 134 35.8


User provided reference genes

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