Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 5.6e-115 417.5 200 100.0
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 3.5e-109 398.3 200 94.0
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 5.5e-94 347.8 198 83.3
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 1.7e-87 326.2 268 63.8
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 3.3e-83 312.0 195 76.9
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.4e-81 305.8 198 75.8
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 2.4e-81 305.8 190 78.4
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.4e-81 305.8 199 74.4
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 3.1e-81 305.4 201 72.1
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 7.7e-80 300.8 198 74.2
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 6.5e-79 297.7 198 73.7
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 4.2e-78 295.0 203 71.9
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 5.5e-78 294.7 194 71.1
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.6e-77 293.1 203 71.9
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.6e-77 293.1 194 71.6
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 7.9e-77 290.8 197 71.6
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.0e-76 290.4 214 66.4
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 8.8e-76 287.3 200 69.5
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 2.0e-75 286.2 197 70.1
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 3.3e-75 285.4 194 71.6
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.3e-74 283.5 203 69.5
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 2.8e-74 282.3 207 68.6
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 2.8e-74 282.3 196 67.3
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 2.8e-74 282.3 197 71.1
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 2.8e-74 282.3 201 69.2
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 8.2e-74 280.8 200 69.0
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.4e-73 280.0 203 67.5
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.2e-72 276.9 204 66.7
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 1.5e-72 276.6 190 72.1
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 5.9e-72 274.6 186 72.0
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 5.9e-72 274.6 186 72.0
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 1.3e-71 273.5 197 67.0
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 1.3e-71 273.5 211 66.4
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.3e-71 273.5 190 68.4
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 1.7e-71 273.1 196 67.3
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.7e-71 273.1 196 67.3
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.7e-71 273.1 201 67.2
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 3.8e-71 271.9 192 70.3
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 5.0e-71 271.6 197 68.0
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.1e-70 270.4 215 64.2
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 1.4e-70 270.0 196 73.0
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 3.2e-70 268.9 195 66.2
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 7.2e-70 267.7 195 66.7
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 1.6e-69 266.5 195 66.7
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 2.1e-69 266.2 196 67.9
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.7e-69 265.0 194 67.5
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 1.0e-68 263.8 199 65.3
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 2.3e-68 262.7 197 66.0
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 3.0e-68 262.3 195 65.6
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 3.9e-68 261.9 195 66.7
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 5.2e-68 261.5 196 65.8
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 8.8e-68 260.8 196 65.3
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.5e-67 260.0 198 66.2
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.5e-67 260.0 194 67.0
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 2.0e-67 259.6 197 64.5
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.6e-67 259.2 200 63.5
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 4.4e-67 258.5 194 67.0
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 5.7e-67 258.1 201 63.7
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.3e-66 256.9 199 64.3
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.3e-66 256.9 203 64.0
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 3.7e-66 255.4 231 57.6
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 6.3e-66 254.6 231 57.6
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 6.3e-66 254.6 194 65.5
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 8.2e-66 254.2 196 66.3
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 1.4e-65 253.4 195 63.6
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 1.4e-65 253.4 196 64.8
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 2.4e-65 252.7 185 67.6
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 4.1e-65 251.9 197 64.5
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 9.1e-65 250.8 131 86.3
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 2.0e-64 249.6 194 64.9
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.0e-64 249.6 194 64.9
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 3.5e-64 248.8 194 64.4
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 1.0e-63 247.3 156 72.4
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 2.2e-63 246.1 194 62.4
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 8.5e-63 244.2 178 70.8
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 8.5e-63 244.2 196 61.7
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 4.2e-62 241.9 125 87.2
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 1.6e-61 240.0 258 51.9
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 1.6e-61 240.0 190 65.3
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 4.7e-61 238.4 192 62.5
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 4.7e-61 238.4 122 85.2
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 6.1e-61 238.0 189 61.4
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 4.0e-60 235.3 195 57.9
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 1.2e-59 233.8 189 60.3
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 4.4e-59 231.9 128 82.8
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 9.7e-59 230.7 129 79.8
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 4.8e-58 228.4 195 61.0
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 4.1e-57 225.3 126 79.4
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 7.0e-57 224.6 205 57.6
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.2e-55 219.5 121 78.5
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 2.9e-55 219.2 176 60.8
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.0e-55 218.4 193 55.4
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 8.5e-55 217.6 193 55.4
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 3.6e-53 212.2 258 48.1
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 1.4e-52 210.3 188 56.9
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.1e-49 200.7 124 75.0
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.1e-49 199.1 200 51.0
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 4.1e-49 198.7 167 62.3
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 7.0e-49 198.0 98 91.8
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.2e-48 197.2 131 67.2
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 1.6e-48 196.8 163 62.6
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.0e-47 194.1 120 71.7
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 6.5e-47 191.4 160 60.6
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 8.6e-47 191.0 116 71.6
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 1.9e-46 189.9 134 68.7
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 3.3e-46 189.1 202 52.0
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 5.5e-46 188.3 126 65.9
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 1.0e-44 184.1 165 57.0
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 4.1e-41 172.2 160 58.1
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 9.2e-41 171.0 113 60.2
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 9.2e-41 171.0 131 65.6
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.2e-40 170.6 127 64.6
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 3.8e-39 165.6 113 60.2
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.5e-38 162.9 111 63.1
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 2.0e-35 153.3 271 37.3
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 1.0e-31 141.0 138 54.3
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.5e-30 136.3 125 48.8
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 9.5e-30 134.4 157 51.0
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 9.5e-30 134.4 63 93.7
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.1e-28 131.0 98 63.3
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 4.0e-28 129.0 106 50.9
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 4.9e-26 122.1 60 85.0
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 4.9e-26 122.1 112 60.7
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 8.3e-26 121.3 64 84.4
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.2e-24 117.5 100 45.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 2.0e-24 116.7 106 48.1
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 2.7e-24 116.3 96 53.1
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 1.0e-23 114.4 113 55.8
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 5.6e-22 108.6 95 47.4
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 1.4e-17 94.0 93 38.7
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 1.4e-17 94.0 104 43.3
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 3.9e-15 85.9 113 45.1
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 1.9e-14 83.6 97 50.5
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 5.6e-14 82.0 114 43.0
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 2.8e-13 79.7 112 40.2
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 3.6e-13 79.3 42 76.2
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 3.1e-12 76.3 111 37.8
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.2e-10 70.1 33 87.9
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 2.2e-10 70.1 33 87.9
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 1.6e-08 63.9 120 36.7
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 7.8e-08 61.6 109 37.6
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 1.5e-06 57.4 34 73.5
BolC6t35595H Brassica oleracea HOM05D040450 ORTHO05D033487 7.3e-06 55.1 26 84.6


User provided reference genes

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