Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 0.0e+00 1494.9 741 100.0
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 0.0e+00 1402.5 727 96.6
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 0.0e+00 1209.9 727 84.0
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 0.0e+00 1147.9 696 82.3
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 0.0e+00 1083.9 727 75.0
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 5.2e-307 1057.4 727 73.6
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.4e-304 1049.3 727 74.1
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.5e-301 1038.5 727 72.4
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 2.1e-300 1035.4 727 71.3
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.0e-298 1028.9 727 71.9
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.4e-298 1028.1 727 71.9
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 1.6e-295 1019.2 727 71.5
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 3.5e-295 1018.1 727 70.6
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 5.9e-295 1017.3 666 76.1
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 3.9e-294 1014.6 727 71.0
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.5e-293 1012.7 727 71.1
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 3.6e-292 1008.1 727 70.0
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 2.6e-290 1001.9 727 70.8
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.1e-288 996.5 728 71.0
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.4e-288 996.1 737 69.1
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 9.2e-288 993.4 727 69.1
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 2.0e-287 992.3 727 69.5
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 2.0e-287 992.3 728 69.8
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 2.7e-287 991.9 729 69.5
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 3.5e-287 991.5 730 68.9
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 3.0e-286 988.4 727 69.9
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 1.1e-285 986.5 728 70.1
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 4.3e-285 984.6 727 69.1
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.8e-284 981.9 728 69.1
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 2.8e-284 981.9 715 70.9
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 3.4e-282 974.9 728 68.8
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 7.5e-282 973.8 727 68.6
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.1e-280 969.9 727 67.8
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 3.2e-280 968.4 727 67.7
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.7e-278 962.6 727 67.4
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 1.5e-277 959.5 727 69.2
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 4.3e-277 958.0 727 68.0
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 2.3e-275 952.2 727 67.3
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 1.7e-273 946.0 734 65.9
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.5e-269 932.9 727 67.1
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.3e-269 931.4 727 66.9
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 2.4e-267 925.6 726 66.9
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 2.6e-266 922.2 727 64.4
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 9.9e-266 920.2 732 66.5
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 2.2e-265 919.1 747 65.5
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 7.1e-264 914.1 735 64.8
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 3.5e-263 911.8 737 63.2
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 1.3e-262 909.8 727 66.6
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 2.1e-260 902.5 729 63.9
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.4e-258 895.2 744 64.1
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 9.3e-256 887.1 665 69.5
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 4.6e-255 884.8 735 62.9
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 3.9e-254 881.7 733 63.8
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.1e-253 880.2 732 64.2
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 1.9e-253 879.4 733 63.6
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 4.3e-253 878.2 732 64.2
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 4.3e-253 878.2 733 63.6
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 4.3e-253 878.2 733 63.6
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 1.2e-250 870.2 736 62.9
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 1.6e-247 859.8 733 63.2
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 2.3e-246 855.9 784 58.9
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 2.8e-244 849.0 740 60.1
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.9e-240 836.3 730 60.3
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 4.6e-239 831.6 733 59.3
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 3.0e-238 828.9 760 58.6
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 8.7e-238 827.4 733 58.9
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 2.5e-232 809.3 733 58.3
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 2.7e-231 805.8 730 60.0
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 1.9e-229 799.7 730 57.3
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 9.7e-229 797.3 730 57.5
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 2.2e-228 796.2 737 57.7
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 1.1e-227 793.9 734 57.8
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 4.1e-227 792.0 750 57.1
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 5.3e-227 791.6 729 57.3
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 6.5e-225 784.6 736 56.8
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 6.5e-225 784.6 744 56.6
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 3.6e-223 778.9 746 56.8
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 3.6e-223 778.9 735 55.2
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 9.7e-221 770.8 731 56.4
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 2.2e-220 769.6 730 54.4
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.8e-220 769.2 737 56.3
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 1.1e-219 767.3 737 56.2
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 4.1e-219 765.4 733 56.3
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 6.9e-219 764.6 672 59.7
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.0e-218 763.1 738 56.0
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 2.9e-217 759.2 738 55.0
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 5.1e-214 748.4 727 56.4
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 6.7e-214 748.0 730 54.8
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.5e-213 746.9 731 54.0
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.8e-212 742.7 729 54.5
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 7.0e-211 738.0 728 55.1
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 2.0e-210 736.5 729 53.8
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 4.5e-210 735.3 729 53.4
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 5.9e-210 734.9 563 67.1
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 7.7e-210 734.6 735 54.0
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 4.2e-208 728.8 733 54.2
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 2.1e-207 726.5 736 54.9
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 2.7e-207 726.1 734 54.8
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 4.7e-207 725.3 736 54.3
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 5.2e-206 721.8 733 53.9
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 6.7e-206 721.5 728 54.5
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 3.3e-205 719.2 728 54.3
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 3.3e-205 719.2 731 53.1
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 3.3e-205 719.2 730 51.9
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 9.7e-205 717.6 732 53.1
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 1.3e-204 717.2 728 54.3
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 1.7e-204 716.8 728 54.0
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 1.7e-204 716.8 728 54.0
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 6.3e-204 714.9 732 52.7
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 4.1e-203 712.2 734 52.7
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 9.1e-203 711.1 727 54.3
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 1.6e-202 710.3 729 52.8
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 2.0e-202 709.9 718 52.2
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 3.5e-202 709.1 734 54.4
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 4.5e-202 708.8 732 52.7
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 5.9e-202 708.4 726 53.6
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 1.0e-201 707.6 728 52.1
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.0e-201 707.6 721 53.1
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.7e-201 706.8 728 52.9
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.2e-201 706.4 732 52.5
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.5e-200 703.7 728 52.7
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.5e-200 703.7 726 53.3
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 1.2e-199 700.7 728 52.1
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.2e-199 700.7 698 56.3
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 8.8e-198 694.5 729 52.3
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 2.0e-197 693.3 731 52.8
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 2.0e-197 693.3 729 51.6
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 1.8e-195 686.8 730 50.7
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.6e-194 683.7 728 51.8
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 5.9e-194 681.8 728 51.5
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.5e-192 677.2 619 58.2
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.5e-192 676.4 722 51.0
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 6.8e-190 668.3 432 75.5
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 7.5e-189 664.8 827 46.8
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.7e-188 663.7 826 46.9
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 3.7e-188 662.5 715 50.2
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 1.2e-186 657.5 653 54.1
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.2e-183 647.5 731 50.2
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 1.4e-182 644.0 711 51.5
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 5.6e-176 622.1 727 49.5
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 9.8e-173 611.3 497 65.8
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 8.3e-172 608.2 730 47.8
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 6.6e-169 598.6 670 50.0
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 3.5e-162 576.2 596 53.2
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 3.0e-161 573.2 743 46.3
Rhsim10G0162500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.5e-152 544.3 480 60.8
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.4e-150 537.0 886 38.3
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 2.6e-149 533.5 693 44.7
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.6e-149 533.5 897 38.4
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 3.6e-143 513.1 370 67.8
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 5.3e-126 456.1 649 43.6
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 6.5e-124 449.1 395 58.5
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 4.3e-120 436.4 375 60.0
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 1.0e-108 398.7 265 70.9
PRCOL_00006635 Prasinoderma coloniale HOM05D003561 ORTHO05D004351 1.2e-106 391.7 436 46.8
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.6e-98 364.8 748 35.6
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 2.6e-88 330.9 457 44.2
PGSC0003DMG400026677 Solanum tuberosum HOM05D003561 ORTHO05D004351 5.0e-76 290.0 213 66.2
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 1.5e-75 288.5 284 52.5
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 2.1e-74 284.6 349 47.9
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 4.3e-67 260.4 347 46.7
CSS0044953 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 9.5e-59 232.6 205 56.6
RcHm_v2.0_Chr6g0254361 Rosa chinensis HOM05D003561 ORTHO05D004351 1.8e-57 228.4 149 78.5
RcHm_v2.0_Chr6g0254281 Rosa chinensis HOM05D003561 ORTHO05D004351 7.0e-54 216.5 140 77.9
Rhsim10G0161900 Rhododendron simsii HOM05D003561 ORTHO05D000355 2.0e-53 214.9 214 56.1
Oeu027122.1 Olea europaea HOM05D003561 ORTHO05D004351 8.9e-49 199.5 121 76.0
BolC2t11906H Brassica oleracea HOM05D003561 ORTHO05D004351 1.8e-41 175.3 157 54.8
BolC9t55360H Brassica oleracea HOM05D003561 ORTHO05D004351 6.8e-41 173.3 157 54.8
BolC3t20255H Brassica oleracea HOM05D003561 ORTHO05D004351 8.9e-41 172.9 174 51.7
C09p44740 Brassica napus HOM05D003561 ORTHO05D004351 1.2e-40 172.6 168 52.4
C02p15790 Brassica napus HOM05D003561 ORTHO05D004351 2.9e-39 167.9 158 55.1
BcaNung04992 Brassica carinata HOM05D003561 ORTHO05D004351 5.8e-32 143.7 84 79.8
Sc07g0000630 Simmondsia chinensis HOM05D003561 ORTHO05D004351 9.3e-30 136.3 115 62.6
Sc07g0000620 Simmondsia chinensis HOM05D003561 ORTHO05D004351 2.1e-29 135.2 299 30.4
QL11p032339 Quercus lobata HOM05D003561 ORTHO05D004351 1.3e-26 125.9 110 65.5
C09p50480 Brassica napus HOM05D003561 ORTHO05D004351 6.2e-26 123.6 112 56.2
Cpa.g.sc3364.1 Carica papaya HOM05D003561 ORTHO05D004351 1.2e-24 119.4 65 84.6
BcaC03g17819 Brassica carinata HOM05D003561 ORTHO05D004351 2.9e-15 88.2 180 32.8
Lj9C47T4 Lonicera japonica HOM05D003561 ORTHO05D004351 1.1e-14 86.3 121 47.9
DCAR_017864 Daucus carota HOM05D003561 ORTHO05D004351 5.5e-14 84.0 45 84.4
Lj9C43T3 Lonicera japonica HOM05D003561 ORTHO05D004351 2.1e-13 82.0 53 73.6
C02p58430 Brassica napus HOM05D003561 ORTHO05D004351 4.6e-13 80.9 180 31.1
Sabra07G0045400 Salix brachista HOM05D003561 ORTHO05D004351 1.8e-12 79.0 85 42.4
Solyc01g067990.1 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.9e-11 75.5 149 34.2
C09p24450 Brassica napus HOM05D003561 ORTHO05D004351 4.9e-07 60.8 73 41.1
Peaxi162Scf00449g00015 Petunia axillaris HOM05D003561 ORTHO05D306215 7.1e-06 57.0 84 35.7


User provided reference genes

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