Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10211 Corylus avellana HOM05D003561 ORTHO05D033939 9.7e-46 186.4 92 100.0
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 3.7e-29 131.3 69 92.8
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 6.5e-26 120.6 68 86.8
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 5.7e-22 107.5 69 78.3
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 8.3e-21 103.6 70 78.6
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.7e-19 98.6 67 71.6
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 3.5e-19 98.2 70 72.9
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 4.5e-19 97.8 70 75.7
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 5.9e-19 97.4 70 75.7
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 7.7e-19 97.1 71 76.1
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 1.0e-18 96.7 67 74.6
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.3e-18 96.3 70 74.3
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 1.3e-18 96.3 70 72.9
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 1.3e-18 96.3 70 72.9
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.3e-18 96.3 70 71.4
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.7e-18 95.9 67 70.1
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 5.0e-18 94.4 71 71.8
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 5.0e-18 94.4 67 68.7
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.0e-18 94.4 67 68.7
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.0e-18 94.4 67 68.7
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 5.0e-18 94.4 70 68.6
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 5.0e-18 94.4 70 68.6
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 5.0e-18 94.4 70 71.4
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 8.5e-18 93.6 70 64.3
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 8.5e-18 93.6 67 71.6
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.1e-17 93.2 70 70.0
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 2.5e-17 92.0 65 67.7
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 2.5e-17 92.0 70 68.6
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 2.5e-17 92.0 69 66.7
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 3.2e-17 91.7 70 70.0
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.2e-17 91.3 70 71.4
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.2e-17 91.3 70 72.9
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 5.5e-17 90.9 70 71.4
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 5.5e-17 90.9 70 72.9
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 5.5e-17 90.9 61 73.8
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 5.5e-17 90.9 71 69.0
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 7.2e-17 90.5 62 75.8
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 7.2e-17 90.5 70 72.9
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 7.2e-17 90.5 70 72.9
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 9.5e-17 90.1 71 66.2
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 1.2e-16 89.7 70 68.6
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 1.6e-16 89.4 71 67.6
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 1.6e-16 89.4 70 68.6
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 2.1e-16 89.0 70 65.7
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 2.1e-16 89.0 70 67.1
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.8e-16 88.6 70 71.4
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 3.6e-16 88.2 71 70.4
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 3.6e-16 88.2 70 64.3
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 6.1e-16 87.4 71 67.6
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 6.1e-16 87.4 70 68.6
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 6.1e-16 87.4 71 67.6
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 8.0e-16 87.0 70 68.6
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 8.0e-16 87.0 70 65.7
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.0e-15 86.7 70 70.0
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 1.0e-15 86.7 70 65.7
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 1.4e-15 86.3 70 65.7
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 1.8e-15 85.9 83 57.8
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 1.8e-15 85.9 83 57.8
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 1.8e-15 85.9 71 66.2
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 1.8e-15 85.9 70 65.7
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 1.8e-15 85.9 70 65.7
BcaNung04992 Brassica carinata HOM05D003561 ORTHO05D004351 2.3e-15 85.5 71 64.8
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 2.3e-15 85.5 62 69.4
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 3.0e-15 85.1 71 66.2
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 3.0e-15 85.1 71 66.2
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 3.0e-15 85.1 71 63.4
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.0e-15 85.1 70 65.7
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 5.2e-15 84.3 70 62.9
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 5.2e-15 84.3 83 57.8
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 6.8e-15 84.0 71 63.4
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 8.8e-15 83.6 71 64.8
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 3.4e-14 81.6 70 60.0
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 3.4e-14 81.6 71 62.0
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 5.7e-14 80.9 69 62.3
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 9.8e-14 80.1 71 62.0
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 1.3e-13 79.7 69 59.4
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 2.8e-13 78.6 70 61.4
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 2.8e-13 78.6 68 58.8
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 3.7e-13 78.2 69 58.0
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 3.7e-13 78.2 69 58.0
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 4.9e-13 77.8 71 63.4
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 4.9e-13 77.8 74 59.5
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 4.9e-13 77.8 68 57.4
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 6.3e-13 77.4 70 62.9
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 6.3e-13 77.4 54 72.2
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 8.3e-13 77.0 71 56.3
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 1.1e-12 76.6 69 58.0
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 1.1e-12 76.6 69 58.0
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.1e-12 76.6 69 58.0
CSS0044993 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D033939 1.4e-12 76.3 57 70.2
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 2.4e-12 75.5 71 60.6
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 2.4e-12 75.5 71 60.6
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 3.1e-12 75.1 70 60.0
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 3.1e-12 75.1 68 55.9
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 4.1e-12 74.7 69 59.4
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 4.1e-12 74.7 69 59.4
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 5.4e-12 74.3 69 56.5
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 7.0e-12 73.9 46 80.4
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 9.2e-12 73.6 76 48.7
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 2.0e-11 72.4 70 54.3
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 2.7e-11 72.0 45 77.8
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 2.7e-11 72.0 49 77.6
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 4.5e-11 71.2 70 58.6
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 1.0e-10 70.1 43 81.4
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 1.3e-10 69.7 102 45.1
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 1.3e-10 69.7 70 57.1
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 1.7e-10 69.3 71 49.3
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 1.7e-10 69.3 69 55.1
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 5.0e-10 67.8 70 57.1
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 5.0e-10 67.8 76 52.6
vmacro19459 Vaccinium macrocarpon HOM05D003561 ORTHO05D033939 5.0e-10 67.8 52 69.2
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 6.6e-10 67.4 64 60.9
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 8.6e-10 67.0 48 66.7
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.1e-09 66.6 52 65.4
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 1.5e-09 66.2 70 54.3
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 1.5e-09 66.2 56 62.5
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 1.9e-09 65.9 67 53.7
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 1.9e-09 65.9 54 64.8
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 2.5e-09 65.5 57 59.6
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 2.5e-09 65.5 62 53.2
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.5e-09 65.5 56 64.3
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 3.3e-09 65.1 48 66.7
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 3.3e-09 65.1 76 40.8
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 5.6e-09 64.3 87 46.0
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 5.6e-09 64.3 61 50.8
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 7.3e-09 63.9 56 58.9
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 7.3e-09 63.9 56 58.9
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 7.3e-09 63.9 49 63.3
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 7.3e-09 63.9 62 56.5
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 1.2e-08 63.2 54 57.4
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.6e-08 62.8 69 50.7
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.1e-08 62.4 61 47.5
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 2.8e-08 62.0 61 49.2
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 8.0e-08 60.5 61 49.2
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 8.0e-08 60.5 55 50.9
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 1.4e-07 59.7 56 60.7
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.3e-07 58.9 76 40.8
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 4.0e-07 58.2 45 62.2
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 5.2e-07 57.8 70 45.7
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 6.8e-07 57.4 67 49.3
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 1.5e-06 56.2 45 55.6
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 2.0e-06 55.8 49 51.0


User provided reference genes

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