Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 8.4e-246 853.2 421 100.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 6.7e-219 763.8 419 89.5
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 9.7e-218 760.0 417 87.5
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.6e-215 751.9 417 86.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.0e-214 750.0 437 85.6
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 6.1e-212 740.7 419 85.2
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.3e-209 733.0 419 84.5
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.7e-209 732.6 418 84.7
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 4.8e-209 731.1 418 84.4
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.4e-208 728.8 417 84.2
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 5.3e-208 727.6 417 84.2
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.0e-208 727.2 418 84.0
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 9.1e-208 726.9 418 83.3
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 2.7e-207 725.3 417 84.2
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.3e-206 723.0 419 83.3
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.2e-206 722.2 415 83.6
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 8.5e-206 720.3 419 82.3
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 4.2e-205 718.0 414 83.3
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.5e-205 717.6 419 82.6
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 5.5e-205 717.6 414 83.8
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 9.4e-205 716.8 419 82.3
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 9.4e-205 716.8 414 82.6
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.7e-204 715.3 417 82.7
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 3.6e-204 714.9 419 82.1
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 3.6e-204 714.9 419 82.3
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.3e-203 712.2 416 81.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 2.3e-203 712.2 416 82.0
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 3.0e-203 711.8 416 81.5
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 6.8e-203 710.7 441 78.7
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 8.8e-203 710.3 416 81.2
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.2e-202 709.9 415 81.9
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.6e-202 708.8 419 81.9
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.4e-202 708.4 417 81.8
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 5.7e-202 707.6 436 79.8
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 5.7e-202 707.6 416 80.5
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 9.8e-202 706.8 417 81.5
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.7e-201 706.1 417 81.8
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.2e-201 705.7 417 80.8
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.3e-201 703.7 419 80.9
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.8e-200 702.6 416 80.5
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 2.4e-200 702.2 416 80.3
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.4e-200 702.2 416 81.5
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 4.1e-200 701.4 417 80.6
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 5.4e-200 701.0 416 81.0
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 7.0e-200 700.7 420 79.8
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 9.1e-200 700.3 414 80.7
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.7e-199 698.7 417 81.1
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 4.5e-199 698.0 414 81.9
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 5.9e-199 697.6 414 81.9
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.0e-198 696.8 416 79.8
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.3e-198 696.4 417 81.1
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.7e-198 696.0 417 81.1
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.7e-198 696.0 416 80.3
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.9e-198 695.3 416 79.3
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.0e-198 694.5 417 80.3
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-197 693.3 414 79.0
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.2e-196 689.9 418 79.9
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.2e-196 689.9 436 77.1
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 4.7e-196 688.0 417 78.4
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 4.7e-196 688.0 414 80.4
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 6.1e-196 687.6 415 80.2
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 8.0e-196 687.2 421 79.3
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 8.0e-196 687.2 416 78.8
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 8.0e-196 687.2 414 78.5
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.0e-195 684.9 433 77.6
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.2e-195 684.5 416 78.1
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 5.2e-195 684.5 417 77.9
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 8.8e-195 683.7 419 78.8
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.5e-194 682.9 417 77.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.6e-194 682.2 417 78.4
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 3.4e-194 681.8 417 78.4
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.4e-194 681.4 433 77.4
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 4.4e-194 681.4 417 78.9
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 7.5e-194 680.6 412 77.4
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 9.8e-194 680.2 412 79.6
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.3e-193 679.9 433 77.4
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.7e-193 679.5 417 76.5
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 2.2e-193 679.1 419 76.8
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.8e-193 678.7 414 78.5
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.7e-193 678.3 432 77.1
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 3.7e-193 678.3 417 78.4
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.8e-192 676.0 415 78.6
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.8e-192 676.0 416 77.6
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.4e-192 675.6 416 77.2
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.4e-192 675.6 416 76.4
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.4e-192 675.6 419 78.5
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.2e-191 673.3 419 77.3
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 5.9e-191 671.0 417 76.7
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.7e-190 669.5 415 75.2
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.9e-190 668.7 449 72.8
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 6.6e-190 667.5 416 76.0
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 8.6e-190 667.2 416 76.2
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 8.6e-190 667.2 416 74.5
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.5e-189 666.4 416 76.0
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 5.6e-189 664.5 416 76.0
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.3e-189 664.1 416 76.2
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 2.1e-188 662.5 416 75.7
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.8e-187 659.4 418 76.1
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.3e-187 659.1 416 76.2
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 3.0e-187 658.7 417 75.3
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 8.9e-187 657.1 420 75.5
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.2e-186 656.8 419 77.1
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.2e-186 656.8 416 75.0
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 7.5e-186 654.1 416 75.5
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 7.5e-186 654.1 417 74.6
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 9.8e-186 653.7 416 75.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 1.7e-185 652.9 412 76.0
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 3.7e-185 651.7 406 78.6
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 4.9e-185 651.4 416 76.9
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 6.4e-185 651.0 457 69.1
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.1e-184 648.3 416 75.7
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 7.0e-184 647.5 412 74.8
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.6e-183 646.4 421 74.6
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.6e-183 644.8 413 74.8
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.0e-182 643.7 366 84.2
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.0e-182 643.7 412 75.5
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 3.3e-181 638.6 415 72.3
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.6e-181 637.9 410 72.7
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 5.6e-181 637.9 421 71.0
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.1e-179 633.6 417 71.5
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 5.2e-179 631.3 412 71.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 6.8e-179 630.9 416 73.6
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.4e-178 628.6 411 72.0
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 4.4e-178 628.2 415 71.3
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 8.3e-177 624.0 498 62.2
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 9.2e-176 620.5 369 79.9
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.7e-174 616.3 411 72.7
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.9e-173 612.8 363 80.2
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 9.5e-173 610.5 417 72.2
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 6.2e-172 607.8 417 72.7
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.2e-170 603.6 413 70.2
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.0e-166 590.5 360 77.5
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 5.8e-162 574.7 341 81.2
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 5.8e-162 574.7 341 79.8
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.4e-160 570.1 301 93.4
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 3.2e-160 568.9 416 68.3
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.1e-157 560.5 436 66.3
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 4.4e-154 548.5 413 62.5
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.1e-147 527.3 410 61.2
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 6.9e-147 524.6 415 62.2
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.6e-146 522.7 412 59.2
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.0e-142 510.8 411 58.2
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-134 483.8 302 81.5
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.1e-131 472.6 340 67.9
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 5.3e-131 471.9 427 54.8
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.2e-128 462.2 314 72.9
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 3.4e-114 416.0 223 88.3
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 6.3e-108 395.2 291 67.7
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.2e-103 380.9 416 48.1
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 3.0e-102 376.3 235 76.6
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 2.0e-101 373.6 498 40.6
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.8e-99 367.1 244 71.7
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.9e-97 359.8 427 44.7
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 6.5e-97 358.6 403 45.4
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.2e-93 347.8 198 82.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.8e-92 342.4 198 81.3
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 7.5e-77 292.0 221 66.1
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 9.2e-75 285.0 226 66.8
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.3e-68 261.9 258 55.0
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.0e-66 257.3 174 70.7
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.3e-64 249.6 162 74.7
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 6.2e-63 245.7 155 74.8
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.1e-59 235.0 178 68.0
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 3.2e-59 233.4 129 86.0
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.9e-57 226.5 151 74.2
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.1e-54 218.4 229 52.8
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.9e-52 209.5 181 60.2
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.4e-51 208.0 119 81.5
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.2e-51 206.8 338 38.8
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.2e-51 206.8 121 76.0
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.5e-48 198.0 344 38.4
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.8e-46 191.0 127 73.2
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.6e-39 166.8 122 63.9
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 5.3e-38 162.9 95 81.1
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 6.9e-30 136.0 88 73.9
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.6e-29 134.0 127 54.3
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 2.7e-26 124.0 66 81.8
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 8.1e-23 112.5 71 76.1
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.9e-17 93.6 57 77.2
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 3.3e-16 90.5 87 48.3
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.6e-15 88.2 87 48.3
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.2e-11 73.9 59 67.8
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 2.8e-07 60.8 50 56.0
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 8.2e-07 59.3 35 71.4
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 9.0e-06 55.8 144 30.6


User provided reference genes

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