Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10129 Corylus avellana HOM05D003709 ORTHO05D004364 1.2e-98 363.2 185 100.0
Haze_00443 Corylus avellana HOM05D000273 ORTHO05D000198 9.7e-21 104.4 110 58.2
Haze_09934 Corylus avellana HOM05D003709 ORTHO05D004364 1.1e-16 90.9 60 80.0
CiPaw.10G014600 Carya illinoinensis HOM05D003709 ORTHO05D004364 8.0e-15 84.7 58 77.6
RcHm_v2.0_Chr6g0269071 Rosa chinensis HOM05D003709 ORTHO05D004364 1.4e-14 84.0 58 77.6
GSVIVG01033901001 Vitis vinifera HOM05D003709 ORTHO05D004364 4.0e-14 82.4 58 77.6
FvH4_2g10910 Fragaria vesca HOM05D003709 ORTHO05D004364 2.6e-13 79.7 58 72.4
FAN15G3210 Fragaria x ananassa HOM05D003709 ORTHO05D004364 2.6e-13 79.7 58 72.4
FAN20G0151 Fragaria x ananassa HOM05D003709 ORTHO05D004364 2.6e-13 79.7 58 72.4
FAN24G0281 Fragaria x ananassa HOM05D003709 ORTHO05D004364 2.6e-13 79.7 58 72.4
Duzib093G0911 Durio zibethinus HOM05D003709 ORTHO05D004364 5.7e-13 78.6 58 72.4
FAN27G1255 Fragaria x ananassa HOM05D003709 ORTHO05D004364 5.7e-13 78.6 58 70.7
Dinv31727 Davidia involucrata HOM05D003709 ORTHO05D004364 9.8e-13 77.8 58 70.7
Haze_19660 Corylus avellana HOM05D003709 ORTHO05D004364 1.7e-12 77.0 59 71.2
MD10G1058500 Malus domestica HOM05D003709 ORTHO05D004364 1.7e-12 77.0 58 72.4
Hma1.2p1_1724F.1_g299425 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 2.2e-12 76.6 58 72.4
CANSAT64G1889 Cannabis sativa HOM05D003709 ORTHO05D004364 2.8e-12 76.3 59 71.2
QL07p038048 Quercus lobata HOM05D003709 ORTHO05D004364 3.7e-12 75.9 59 71.2
Rhsim03G0069600 Rhododendron simsii HOM05D003709 ORTHO05D004364 3.7e-12 75.9 74 60.8
Eucgr.A02626 Eucalyptus grandis HOM05D003709 ORTHO05D004364 4.8e-12 75.5 58 72.4
Cpa.g.c29173.2 Carica papaya HOM05D003709 ORTHO05D004364 6.3e-12 75.1 58 70.7
COL.COLO4_29662 Corchorus olitorius HOM05D003709 ORTHO05D004364 1.1e-11 74.3 60 68.3
SGA_v2.0_scaffold13G06687 Striga asiatica HOM05D003709 ORTHO05D004364 1.1e-11 74.3 63 65.1
MD13G1200900 Malus domestica HOM05D003709 ORTHO05D004364 1.8e-11 73.6 58 67.2
vmacro07432 Vaccinium macrocarpon HOM05D003709 ORTHO05D004364 1.8e-11 73.6 58 67.2
MD05G1051100 Malus domestica HOM05D003709 ORTHO05D004364 2.4e-11 73.2 58 69.0
MD07G1268900 Malus domestica HOM05D003709 ORTHO05D004364 2.4e-11 73.2 58 70.7
Prupe.8G077900 Prunus persica HOM05D003709 ORTHO05D004364 2.4e-11 73.2 58 69.0
Dinv21156 Davidia involucrata HOM05D003709 ORTHO05D004364 3.1e-11 72.8 59 66.1
Lj1C125T5 Lonicera japonica HOM05D003709 ORTHO05D004364 3.1e-11 72.8 58 69.0
Thecc.05G096700 Theobroma cacao HOM05D003709 ORTHO05D004364 3.1e-11 72.8 58 67.2
THA.LOC104803461 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 4.1e-11 72.4 58 67.2
THA.LOC104826817 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 4.1e-11 72.4 58 67.2
Actinidia05396 Actinidia chinensis HOM05D003709 ORTHO05D004364 5.4e-11 72.0 58 63.8
Gohir.A12G074200 Gossypium hirsutum HOM05D003709 ORTHO05D004364 7.0e-11 71.6 67 56.7
TWI77G0334 Tripterygium wilfordii HOM05D003709 ORTHO05D004364 7.0e-11 71.6 58 65.5
ClCG03G000710 Citrullus lanatus HOM05D003709 ORTHO05D004364 9.1e-11 71.2 58 69.0
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.1e-11 71.2 66 59.1
Gohir.D09G133000 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.6e-10 70.5 58 65.5
Gorai.006G152500 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.6e-10 70.5 58 65.5
Sc20g0006470 Simmondsia chinensis HOM05D003709 ORTHO05D004364 1.6e-10 70.5 58 63.8
Gohir.A09G141700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.0e-10 70.1 58 65.5
PSO357G0160 Papaver somniferum HOM05D003709 ORTHO05D004364 2.0e-10 70.1 58 65.5
DCAR_020733 Daucus carota HOM05D003709 ORTHO05D004364 3.5e-10 69.3 58 65.5
Lalb_Chr20g0111541 Lupinus albus HOM05D003709 ORTHO05D004364 3.5e-10 69.3 60 63.3
CSS0019397 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 5.9e-10 68.6 58 65.5
CAN.G841.14 Capsicum annuum HOM05D003709 ORTHO05D004364 5.9e-10 68.6 58 65.5
AUR62006246 Chenopodium quinoa HOM05D003709 ORTHO05D004364 5.9e-10 68.6 61 65.6
Gohir.A04G147400 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.9e-10 68.6 58 63.8
Gorai.004G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 5.9e-10 68.6 58 63.8
Actinidia12698 Actinidia chinensis HOM05D003709 ORTHO05D004364 7.7e-10 68.2 58 62.1
Actinidia18412 Actinidia chinensis HOM05D003709 ORTHO05D004364 7.7e-10 68.2 58 62.1
Actinidia27230 Actinidia chinensis HOM05D003709 ORTHO05D004364 7.7e-10 68.2 58 62.1
Actinidia28628 Actinidia chinensis HOM05D003709 ORTHO05D004364 7.7e-10 68.2 58 62.1
Actinidia37294 Actinidia chinensis HOM05D003709 ORTHO05D004364 7.7e-10 68.2 58 62.1
CsaV3_3G037560 Cucumis sativus L. HOM05D003709 ORTHO05D004364 7.7e-10 68.2 58 67.2
Thhalv10014881m.g Eutrema salsugineum HOM05D003709 ORTHO05D004364 7.7e-10 68.2 58 63.8
PGR004G2656 Punica granatum HOM05D003709 ORTHO05D004364 7.7e-10 68.2 58 67.2
CSS0033506 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.0e-09 67.8 58 63.8
CSS0048031 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.0e-09 67.8 58 63.8
Nn6g34801 Nelumbo nucifera HOM05D003709 ORTHO05D004364 1.0e-09 67.8 58 63.8
Nitab4.5_0001801g0070 Nicotiana tabacum HOM05D003709 ORTHO05D004364 1.0e-09 67.8 58 63.8
Oeu007203.1 Olea europaea HOM05D003709 ORTHO05D004364 1.0e-09 67.8 58 67.2
Sopen10g032700 Solanum pennellii HOM05D003709 ORTHO05D004364 1.0e-09 67.8 58 65.5
PGSC0003DMG400028247 Solanum tuberosum HOM05D003709 ORTHO05D004364 1.0e-09 67.8 58 65.5
EL10Ac7g16841 Beta vulgaris HOM05D003709 ORTHO05D004364 1.3e-09 67.4 58 65.5
EL10Ac7g16842 Beta vulgaris HOM05D003709 ORTHO05D004364 1.3e-09 67.4 58 65.5
Hma1.2p1_0245F.1_g101590 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 1.3e-09 67.4 58 60.3
MELO3C009499.2 Cucumis melo HOM05D003709 ORTHO05D004364 1.7e-09 67.0 58 65.5
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.7e-09 67.0 75 53.3
Sed0021250 Sechium edule HOM05D003709 ORTHO05D004364 1.7e-09 67.0 58 65.5
arahy.Tifrunner.gnm1.ann1.PZI97L Arachis hypogaea HOM05D003709 ORTHO05D004364 2.3e-09 66.6 70 54.3
BcaB01g05985 Brassica carinata HOM05D003709 ORTHO05D004364 2.3e-09 66.6 75 53.3
BcaC06g32330 Brassica carinata HOM05D003709 ORTHO05D004364 2.3e-09 66.6 58 63.8
BcaC06g32333 Brassica carinata HOM05D003709 ORTHO05D004364 2.3e-09 66.6 58 63.8
A10p30240 Brassica napus HOM05D003709 ORTHO05D004364 2.3e-09 66.6 58 63.8
C09p70650 Brassica napus HOM05D003709 ORTHO05D004364 2.3e-09 66.6 58 63.8
BolC9t59821H Brassica oleracea HOM05D003709 ORTHO05D004364 2.3e-09 66.6 58 63.8
BraA10t45062Z Brassica rapa HOM05D003709 ORTHO05D004364 2.3e-09 66.6 58 63.8
AUR62028484 Chenopodium quinoa HOM05D003709 ORTHO05D138253 2.3e-09 66.6 58 67.2
AUR62028485 Chenopodium quinoa HOM05D003709 ORTHO05D004364 2.3e-09 66.6 58 67.2
AUR62028486 Chenopodium quinoa HOM05D003709 ORTHO05D004364 2.3e-09 66.6 58 67.2
Manes.08G029100 Manihot esculenta HOM05D003709 ORTHO05D004364 2.3e-09 66.6 59 66.1
MBI17_g01496_MAGBIO Magnolia biondii HOM05D003709 ORTHO05D004364 2.9e-09 66.2 58 63.8
Cc06_g06250 Coffea canephora HOM05D003709 ORTHO05D004364 3.8e-09 65.9 58 67.2
Lalb_Chr25g0288201 Lupinus albus HOM05D003709 ORTHO05D004364 3.8e-09 65.9 64 56.2
Solyc10g083220.3 Solanum lycopersicum HOM05D003709 ORTHO05D004364 3.8e-09 65.9 58 65.5
MSTRG.5871 Avicennia marina HOM05D003709 ORTHO05D004364 5.0e-09 65.5 58 62.1
Aqoxy4G02712 Aquilegia oxysepala HOM05D003709 ORTHO05D004364 6.5e-09 65.1 58 62.1
Ca_09030_v3 Cicer arietinum L. HOM05D003709 ORTHO05D004364 6.5e-09 65.1 60 58.3
HanXRQChr04g0114081 Helianthus annuus HOM05D003709 ORTHO05D004364 6.5e-09 65.1 58 62.1
HanXRQChr08g0228531 Helianthus annuus HOM05D003709 ORTHO05D004364 6.5e-09 65.1 58 63.8
Lj2g0024912 Lotus japonicus HOM05D003709 ORTHO05D004364 6.5e-09 65.1 60 58.3
Peaxi162Scf00096g00098 Petunia axillaris HOM05D003709 ORTHO05D004364 6.5e-09 65.1 58 62.1
AL6G16240 Arabidopsis lyrata HOM05D003709 ORTHO05D004364 8.6e-09 64.7 58 62.1
AT5G06240 Arabidopsis thaliana HOM05D003709 ORTHO05D004364 8.6e-09 64.7 58 62.1
Migut.J00663 Erythranthe guttata HOM05D003709 ORTHO05D004364 8.6e-09 64.7 63 58.7
Psat3g030960 Pisum sativum HOM05D003709 ORTHO05D004364 8.6e-09 64.7 60 61.7
ECA247G0210 Erigeron canadensis HOM05D003709 ORTHO05D004364 1.1e-08 64.3 58 60.3
PSO339G2742 Papaver somniferum HOM05D003709 ORTHO05D004364 1.5e-08 63.9 58 60.3
A03p02630 Brassica napus HOM05D003709 ORTHO05D004364 1.9e-08 63.5 58 60.3
BraA03t09624Z Brassica rapa HOM05D003709 ORTHO05D004364 1.9e-08 63.5 58 60.3
Carub.0006s0511 Capsella rubella HOM05D003709 ORTHO05D004364 1.9e-08 63.5 58 62.1
CARHR206940 Cardamine hirsuta HOM05D003709 ORTHO05D004364 1.9e-08 63.5 58 62.1
Haze_19671 Corylus avellana HOM05D003709 ORTHO05D004364 1.9e-08 63.5 58 62.1
Gohir.D11G326500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.5e-08 63.2 58 60.3
Gorai.007G357100 Gossypium raimondii HOM05D003709 ORTHO05D004364 2.5e-08 63.2 58 60.3
Gohir.A13G235900 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.2e-08 62.8 77 49.4
Gorai.002G197000 Gossypium raimondii HOM05D003709 ORTHO05D004364 4.2e-08 62.4 58 58.6
Sp6g36640 Schrenkiella parvula HOM05D003709 ORTHO05D004364 4.2e-08 62.4 58 60.3
Ah.15g090600 Amaranthus hybridus HOM05D003709 ORTHO05D004364 5.5e-08 62.0 61 59.0
BcaB01g05734 Brassica carinata HOM05D003709 ORTHO05D004364 5.5e-08 62.0 58 60.3
Atru.chr8.1435 Acer truncatum HOM05D003709 ORTHO05D004364 7.2e-08 61.6 58 65.5
HPP92_028584 Vanilla planifolia HOM05D003709 ORTHO05D004364 9.5e-08 61.2 58 53.4
Lsat_1_v5_gn_9_14520 Lactuca sativa HOM05D003709 ORTHO05D004364 1.2e-07 60.8 58 56.9
Ciclev10013818m.g Citrus clementina HOM05D003709 ORTHO05D004364 1.6e-07 60.5 58 58.6
Glyma.19G196500 Glycine max HOM05D003709 ORTHO05D004364 1.6e-07 60.5 60 56.7
Gohir.A01G177700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.6e-07 60.5 61 55.7
Gohir.A10G101550 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.6e-07 60.5 61 55.7
SGA_v2.0_scaffold123G33400 Striga asiatica HOM05D003709 ORTHO05D004364 1.6e-07 60.5 35 82.9
TAR623G0195 Trochodendron aralioides HOM05D003709 ORTHO05D004364 1.6e-07 60.5 48 66.7
Aa31sc52G10 Aethionema arabicum HOM05D003709 ORTHO05D004364 2.8e-07 59.7 58 58.6
Glyma.03G198800 Glycine max HOM05D003709 ORTHO05D004364 2.8e-07 59.7 60 55.0
VMungo1383G1751 Vigna mungo HOM05D003709 ORTHO05D004364 2.8e-07 59.7 61 59.0
CDE04G0652 Ceratophyllum demersum HOM05D003709 ORTHO05D004364 3.6e-07 59.3 58 56.9
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.1e-07 58.5 38 73.7
TPR.G23331 Trifolium pratense HOM05D003709 ORTHO05D004364 6.1e-07 58.5 61 57.4
Aa31LG11G7240 Aethionema arabicum HOM05D003709 ORTHO05D004364 1.4e-06 57.4 98 41.8
arahy.Tifrunner.gnm1.ann1.VRIY4R Arachis hypogaea HOM05D003709 ORTHO05D004364 1.4e-06 57.4 60 55.0
Potri.016G074700 Populus trichocarpa HOM05D003709 ORTHO05D004364 1.4e-06 57.4 58 51.7
Phvul.001G193000 Phaseolus vulgaris HOM05D003709 ORTHO05D004364 1.8e-06 57.0 60 55.0
Sabra16G0077300 Salix brachista HOM05D003709 ORTHO05D004364 1.8e-06 57.0 58 51.7
Sabra16G0080200 Salix brachista HOM05D003709 ORTHO05D004364 1.8e-06 57.0 58 51.7
Zm00001eb266720 Zea mays HOM05D003709 ORTHO05D004364 1.8e-06 57.0 63 50.8
Hma1.2p1_2017F.1_g311180 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 2.3e-06 56.6 36 69.4
Gorai.007G188700 Gossypium raimondii HOM05D003709 ORTHO05D004364 3.0e-06 56.2 41 68.3
arahy.Tifrunner.gnm1.ann1.K65CIQ Arachis hypogaea HOM05D003709 ORTHO05D004364 4.0e-06 55.8 60 53.3
Ciclev10012932m.g Citrus clementina HOM05D003709 ORTHO05D004364 4.0e-06 55.8 58 53.4
Sabra06G0074500 Salix brachista HOM05D003709 ORTHO05D004364 4.0e-06 55.8 58 51.7
Gohir.A12G001133 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.2e-06 55.5 36 72.2
Medtr7g105350 Medicago truncatula HOM05D003709 ORTHO05D004364 5.2e-06 55.5 60 51.7
Nitab4.5_0005187g0010 Nicotiana tabacum HOM05D003709 ORTHO05D004364 6.8e-06 55.1 58 62.1
Hund28303 Selenicereus undatus HOM05D003709 ORTHO05D004364 6.8e-06 55.1 42 66.7
Gohir.1Z049729 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.8e-06 54.7 41 68.3
Gohir.A13G149700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.8e-06 54.7 58 56.9
Gohir.D04G000040 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.8e-06 54.7 37 73.0
Gohir.D04G000065 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.8e-06 54.7 41 68.3
Gorai.012G000500 Gossypium raimondii HOM05D003709 ORTHO05D004364 8.8e-06 54.7 37 73.0


User provided reference genes

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