Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10045 Corylus avellana HOM05D005763 ORTHO05D005970 3.0e-288 994.6 543 100.0
Cfa004488 Carpinus fangiana HOM05D005763 ORTHO05D005970 9.2e-245 850.1 533 90.4
CiPaw.05G004900 Carya illinoinensis HOM05D005763 ORTHO05D005970 1.2e-191 673.7 601 67.7
QL02p100429 Quercus lobata HOM05D005763 ORTHO05D005970 7.9e-188 661.0 599 66.4
Prupe.1G578900 Prunus persica HOM05D005763 ORTHO05D005970 1.5e-114 417.5 602 48.7
Dinv19414 Davidia involucrata HOM05D005763 ORTHO05D005970 3.2e-112 409.8 534 50.2
MD15G1435300 Malus domestica HOM05D005763 ORTHO05D005970 4.2e-112 409.5 602 48.0
Ciclev10000672m.g Citrus clementina HOM05D005763 ORTHO05D005970 1.4e-104 384.4 603 48.3
CSS0027988 Camellia sinensis var. sinensis HOM05D005763 ORTHO05D005970 1.1e-99 368.2 605 44.0
Cpa.g.sc113.46 Carica papaya HOM05D005763 ORTHO05D005970 1.1e-99 368.2 605 48.3
Duzib132G0801 Durio zibethinus HOM05D005763 ORTHO05D005970 2.6e-98 363.6 604 46.5
Gohir.A01G183700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 4.5e-98 362.8 602 46.0
Atru.chr6.496 Acer truncatum HOM05D005763 ORTHO05D005970 5.5e-96 355.9 569 49.2
GSVIVG01023250001 Vitis vinifera HOM05D005763 ORTHO05D005970 1.0e-94 351.7 664 41.0
TWI14G0927 Tripterygium wilfordii HOM05D005763 ORTHO05D005970 1.3e-94 351.3 622 44.9
Gorai.002G216800 Gossypium raimondii HOM05D005763 ORTHO05D005970 5.1e-94 349.4 603 45.3
Thecc.02G018700 Theobroma cacao HOM05D005763 ORTHO05D005970 4.5e-90 336.3 603 45.8
RcHm_v2.0_Chr7g0220691 Rosa chinensis HOM05D005763 ORTHO05D005970 6.0e-87 325.9 535 48.0
Manes.10G118700 Manihot esculenta HOM05D005763 ORTHO05D005970 5.1e-86 322.8 609 45.6
TAR628G0443 Trochodendron aralioides HOM05D005763 ORTHO05D005970 5.7e-85 319.3 671 38.3
Eucgr.I02762 Eucalyptus grandis HOM05D005763 ORTHO05D005970 2.8e-84 317.0 603 45.8
Rhsim11G0122700 Rhododendron simsii HOM05D005763 ORTHO05D005970 6.3e-84 315.8 612 41.7
COL.COLO4_17725 Corchorus olitorius HOM05D005763 ORTHO05D005970 1.0e-81 308.5 603 43.6
Potri.004G223700 Populus trichocarpa HOM05D005763 ORTHO05D005970 6.5e-81 305.8 571 45.0
CANSAT54G0901 Cannabis sativa HOM05D005763 ORTHO05D005970 2.3e-78 297.4 580 45.2
MELO3C011821.2 Cucumis melo HOM05D005763 ORTHO05D005970 3.9e-78 296.6 610 41.3
arahy.Tifrunner.gnm1.ann1.67VJX2 Arachis hypogaea HOM05D005763 ORTHO05D005970 5.1e-78 296.2 609 43.8
arahy.Tifrunner.gnm1.ann1.JZ48ZW Arachis hypogaea HOM05D005763 ORTHO05D005970 1.5e-77 294.7 609 43.8
VMungo0540G0189 Vigna mungo HOM05D005763 ORTHO05D005970 4.8e-76 289.7 611 42.6
CsaV3_5G029800 Cucumis sativus L. HOM05D005763 ORTHO05D005970 4.5e-74 283.1 605 41.0
Phvul.006G219000 Phaseolus vulgaris HOM05D005763 ORTHO05D005970 4.5e-74 283.1 612 43.3
PGR142G3615 Punica granatum HOM05D005763 ORTHO05D005970 1.3e-73 281.6 597 39.0
Sed0010757 Sechium edule HOM05D005763 ORTHO05D005970 7.2e-72 275.8 595 39.2
Cc02_g23160 Coffea canephora HOM05D005763 ORTHO05D005970 3.9e-70 270.0 611 36.5
MSTRG.16490 Avicennia marina HOM05D005763 ORTHO05D005970 5.1e-70 269.6 608 36.8
Nn7g37262 Nelumbo nucifera HOM05D005763 ORTHO05D005970 9.7e-69 265.4 683 34.8
Medtr2g005820 Medicago truncatula HOM05D005763 ORTHO05D005970 8.2e-68 262.3 600 39.5
Psat1g222400 Pisum sativum HOM05D005763 ORTHO05D005970 1.8e-67 261.2 614 39.7
FvH4_5g28621 Fragaria vesca HOM05D005763 ORTHO05D005970 1.2e-66 258.5 598 40.1
FAN04G2209 Fragaria x ananassa HOM05D005763 ORTHO05D005970 7.7e-66 255.8 598 39.3
TPR.G2121 Trifolium pratense HOM05D005763 ORTHO05D005970 1.7e-65 254.6 629 36.2
Nitab4.5_0004106g0020 Nicotiana tabacum HOM05D005763 ORTHO05D005970 4.2e-64 250.0 598 37.1
Nitab4.5_0000787g0220 Nicotiana tabacum HOM05D005763 ORTHO05D005970 9.4e-64 248.8 612 37.1
FAN08G3368 Fragaria x ananassa HOM05D005763 ORTHO05D005970 1.2e-63 248.4 608 39.0
Lalb_Chr15g0090741 Lupinus albus HOM05D005763 ORTHO05D005970 2.1e-63 247.7 598 39.5
CAN.G855.2 Capsicum annuum HOM05D005763 ORTHO05D005970 3.5e-58 230.3 602 35.7
ECA236G4930 Erigeron canadensis HOM05D005763 ORTHO05D005970 2.5e-56 224.2 603 34.8
Migut.B00776 Erythranthe guttata HOM05D005763 ORTHO05D005970 3.2e-56 223.8 617 34.4
Sc07g0005120 Simmondsia chinensis HOM05D005763 ORTHO05D005970 1.8e-54 218.0 603 34.3
THA.LOC104820230 Tarenaya hassleriana HOM05D005763 ORTHO05D005970 2.0e-53 214.5 667 34.0
Oeu000133.1 Olea europaea HOM05D005763 ORTHO05D005970 2.6e-53 214.2 651 33.6
FAN18G2102 Fragaria x ananassa HOM05D005763 ORTHO05D005970 3.3e-53 213.8 577 38.8
Gohir.D01G174700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 7.5e-53 212.6 237 56.1
Ca_00042_v3 Cicer arietinum L. HOM05D005763 ORTHO05D005970 1.7e-52 211.5 520 39.2
Hma1.2p1_0633F.1_g192600 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 2.8e-52 210.7 235 55.3
Lsat_1_v5_gn_7_76141 Lactuca sativa HOM05D005763 ORTHO05D005970 3.7e-52 210.3 601 36.6
Glyma.12G166900 Glycine max HOM05D005763 ORTHO05D005970 1.4e-51 208.4 610 39.2
Glyma.16G003000 Glycine max HOM05D005763 ORTHO05D005970 5.3e-51 206.5 620 38.1
PGSC0003DMG400024917 Solanum tuberosum HOM05D005763 ORTHO05D005970 1.2e-50 205.3 603 35.5
Aqoxy5G02633 Aquilegia oxysepala HOM05D005763 ORTHO05D005970 3.5e-50 203.8 673 30.3
Solyc01g103570.3 Solanum lycopersicum HOM05D005763 ORTHO05D005970 7.7e-50 202.6 603 35.0
PSO017G0231 Papaver somniferum HOM05D005763 ORTHO05D005970 5.0e-49 199.9 627 33.0
ClCG11G013280 Citrullus lanatus HOM05D005763 ORTHO05D005970 1.9e-48 198.0 630 34.9
vmacro01712 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 3.2e-48 197.2 237 55.7
PSO170G4663 Papaver somniferum HOM05D005763 ORTHO05D005970 4.2e-48 196.8 626 31.8
Sopen01g045920 Solanum pennellii HOM05D005763 ORTHO05D005970 2.7e-47 194.1 605 34.5
Peaxi162Scf00011g00123 Petunia axillaris HOM05D005763 ORTHO05D005970 1.7e-44 184.9 617 32.1
Lj6g0006999 Lotus japonicus HOM05D005763 ORTHO05D005970 4.1e-43 180.3 600 35.2
CDE08G1622 Ceratophyllum demersum HOM05D005763 ORTHO05D005970 8.8e-38 162.5 599 29.9
DCAR_001755 Daucus carota HOM05D005763 ORTHO05D005970 9.8e-37 159.1 529 32.1
Lj9A299T32 Lonicera japonica HOM05D005763 ORTHO05D005970 2.2e-36 157.9 280 41.1
SGA_v2.0_scaffold304G47918 Striga asiatica HOM05D005763 ORTHO05D005970 9.2e-35 152.5 638 29.3
Actinidia39001 Actinidia chinensis HOM05D005763 ORTHO05D005970 5.9e-34 149.8 265 42.6
Hund15460 Selenicereus undatus HOM05D005763 ORTHO05D005970 5.0e-33 146.7 637 30.3
SalBow7G1738 Salvia bowleyana HOM05D005763 ORTHO05D005970 1.2e-31 142.1 544 31.4
Aa31LG2G11010 Aethionema arabicum HOM05D000113 ORTHO05D005835 2.1e-31 141.4 628 29.9
Sabra01G0155000 Salix brachista HOM05D005763 ORTHO05D005970 2.1e-31 141.4 256 45.3
arahy.Tifrunner.gnm1.ann1.BFGT2Z Arachis hypogaea HOM05D005763 ORTHO05D005970 1.5e-29 135.2 139 64.7
MD08G1241300 Malus domestica HOM05D005763 ORTHO05D005970 3.4e-29 134.0 274 42.0
AL2G18660 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 4.4e-29 133.7 624 31.2
MBI06_g44454_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 1.3e-28 132.1 604 29.6
BcaB04g20185 Brassica carinata HOM05D005763 ORTHO05D005970 1.8e-27 128.3 621 29.1
Sabra01G0169400 Salix brachista HOM05D005763 ORTHO05D005970 1.8e-27 128.3 192 53.1
unitig_26.g9070 Utricularia gibba HOM05D005763 ORTHO05D005970 2.7e-26 124.4 583 28.0
Sp2g05580 Schrenkiella parvula HOM05D005763 ORTHO05D005970 4.6e-26 123.6 617 31.3
Carub.0002s0660 Capsella rubella HOM05D005763 ORTHO05D005970 2.3e-25 121.3 630 27.9
EL10Ac6g14141 Beta vulgaris HOM05D005763 ORTHO05D005970 1.5e-24 118.6 417 29.7
AL2G18480 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 1.6e-23 115.2 630 28.7
AT1G58025 Arabidopsis thaliana HOM05D005763 ORTHO05D005970 4.7e-23 113.6 630 28.4
BcaC09g49515 Brassica carinata HOM05D005763 ORTHO05D005970 2.6e-21 107.8 613 26.4
A01p28160 Brassica napus HOM05D005763 ORTHO05D005970 3.4e-21 107.5 616 26.9
BraA01t02945Z Brassica rapa HOM05D005763 ORTHO05D005970 4.4e-21 107.1 615 26.7
C01p35700 Brassica napus HOM05D005763 ORTHO05D005970 2.9e-20 104.4 609 26.3
BolC1t03529H Brassica oleracea HOM05D005763 ORTHO05D005970 2.9e-20 104.4 609 26.3
Thhalv10023369m.g Eutrema salsugineum HOM05D005763 ORTHO05D005970 2.9e-20 104.4 625 29.4
CARHR054180 Cardamine hirsuta HOM05D005763 ORTHO05D005970 1.9e-19 101.7 402 29.9
Hma1.2p1_0633F.1_g192590 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 3.2e-19 100.9 176 39.8
AUR62028255 Chenopodium quinoa HOM05D005763 ORTHO05D005970 2.7e-18 97.8 416 29.1
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 5.0e-17 93.6 234 35.0
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 1.9e-16 91.7 231 35.5
ATR1136G018 Amborella trichopoda HOM05D005763 ORTHO05D005970 2.5e-16 91.3 703 23.9
HPP92_011333 Vanilla planifolia HOM05D005763 ORTHO05D005970 2.3e-14 84.7 641 25.6
HanXRQChr11g0338791 Helianthus annuus HOM05D005763 ORTHO05D005970 7.5e-13 79.7 282 33.7
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 7.5e-13 79.7 234 33.8
Actinidia39003 Actinidia chinensis HOM05D005763 ORTHO05D005970 2.2e-12 78.2 237 32.1
MBI06_g48164_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 2.2e-12 78.2 260 32.3
AUR62040623 Chenopodium quinoa HOM05D005763 ORTHO05D005970 7.1e-11 73.2 46 73.9
AUR62040622 Chenopodium quinoa HOM05D005763 ORTHO05D005970 9.2e-11 72.8 279 30.5
Lj9A299T33 Lonicera japonica HOM05D005763 ORTHO05D005970 7.8e-10 69.7 84 50.0
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 1.0e-09 69.3 55 61.8
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 8.6e-09 66.2 169 35.5
Thecc.02G018900 Theobroma cacao HOM05D005763 ORTHO05D005970 1.5e-08 65.5 81 49.4
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 1.9e-08 65.1 130 38.5
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 1.9e-08 65.1 122 40.2
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 3.3e-08 64.3 85 48.2
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 3.3e-08 64.3 85 48.2
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 3.3e-08 64.3 85 48.2
Lsat_1_v5_gn_9_120281 Lactuca sativa HOM05D005763 ORTHO05D005970 7.3e-08 63.2 142 37.3
arahy.Tifrunner.gnm1.ann1.V25XF9 Arachis hypogaea HOM05D005763 ORTHO05D005970 9.5e-08 62.8 47 72.3
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 2.1e-07 61.6 121 40.5
SEGI_38432 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 2.1e-07 61.6 254 28.7
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 3.6e-07 60.8 126 37.3
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 3.6e-07 60.8 84 42.9
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 4.7e-07 60.5 126 36.5
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 1.1e-06 59.3 85 45.9
Os08g0109500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 1.1e-06 59.3 481 22.9
MD15G1435000 Malus domestica HOM05D005763 ORTHO05D005970 1.4e-06 58.9 86 40.7
Os06g0355500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 1.8e-06 58.5 120 37.5
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 2.3e-06 58.2 84 46.4
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 2.3e-06 58.2 88 39.8
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 2.3e-06 58.2 85 44.7
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 3.1e-06 57.8 84 46.4
SEGI_32531 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 3.1e-06 57.8 35 71.4
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 4.0e-06 57.4 86 46.5
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 6.8e-06 56.6 236 26.7


User provided reference genes

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