Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 0.0e+00 1485.7 808 100.0
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 0.0e+00 1243.8 808 87.4
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 0.0e+00 1091.3 810 76.7
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 4.5e-304 1047.7 809 74.9
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 1.5e-283 979.5 812 69.6
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 7.0e-281 970.7 812 69.3
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 5.0e-279 964.5 816 69.4
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 1.1e-278 963.4 808 68.9
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 9.7e-275 950.3 812 68.3
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 7.0e-273 944.1 811 67.8
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 2.1e-269 932.6 813 67.2
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 7.5e-267 924.1 808 65.8
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 6.3e-266 921.0 784 68.0
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 3.5e-264 915.2 812 66.7
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 6.5e-263 911.0 812 66.1
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 8.5e-263 910.6 815 65.6
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 1.5e-262 909.8 817 65.7
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 2.1e-261 906.0 814 65.4
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 8.8e-260 900.6 809 65.1
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.5e-259 899.8 812 65.9
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 9.8e-259 897.1 808 64.5
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 3.7e-258 895.2 813 65.1
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 1.4e-257 893.3 789 66.0
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 2.4e-257 892.5 778 65.3
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 1.0e-255 887.1 815 63.7
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.9e-255 885.6 812 64.0
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 3.8e-255 885.2 810 65.2
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 5.5e-254 881.3 838 62.6
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 3.6e-253 878.6 759 68.5
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 4.7e-253 878.2 808 63.9
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 3.0e-252 875.5 815 63.1
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 3.0e-252 875.5 816 63.5
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 5.2e-252 874.8 810 63.0
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 6.8e-252 874.4 812 62.7
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 2.6e-251 872.5 812 62.6
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 3.2e-249 865.5 814 62.8
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 4.6e-248 861.7 815 62.8
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 6.6e-247 857.8 808 63.0
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 2.1e-245 852.8 814 62.3
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 4.7e-245 851.7 832 61.3
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 8.0e-245 850.9 810 61.6
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 2.9e-242 842.4 809 61.4
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 3.7e-242 842.0 810 61.5
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 1.4e-241 840.1 816 60.0
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 2.4e-241 839.3 810 60.4
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 3.2e-241 839.0 810 60.4
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 1.2e-240 837.0 810 60.5
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 1.6e-240 836.6 810 61.0
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 2.7e-240 835.9 809 61.1
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 5.0e-239 831.6 816 59.9
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 5.0e-239 831.6 814 61.1
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 6.6e-239 831.2 884 59.4
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 2.8e-237 825.9 782 62.3
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 4.7e-237 825.1 812 59.4
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 8.1e-237 824.3 809 59.5
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 8.1e-237 824.3 810 59.4
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 4.0e-236 822.0 811 60.0
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.5e-235 820.1 819 59.7
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.3e-234 817.0 813 58.9
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 2.7e-232 809.3 811 58.7
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 3.5e-232 808.9 811 59.3
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 1.0e-231 807.4 779 62.0
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 3.9e-231 805.4 812 61.2
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 6.6e-231 804.7 808 59.3
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 1.1e-230 803.9 813 58.9
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 1.6e-229 800.0 898 56.3
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 2.6e-227 792.7 809 58.2
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.6e-227 792.7 815 58.5
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 1.1e-225 787.3 801 58.6
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 3.2e-225 785.8 811 58.2
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 3.2e-225 785.8 811 58.2
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 1.6e-224 783.5 787 59.8
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 1.6e-224 783.5 820 57.6
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 2.1e-224 783.1 825 57.0
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.3e-223 779.6 750 63.5
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 5.1e-223 778.5 812 59.4
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 2.4e-217 759.6 811 58.7
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 6.6e-215 751.5 782 57.4
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 2.0e-211 740.0 810 57.4
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 9.9e-211 737.6 807 54.6
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 6.4e-210 734.9 831 54.9
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 2.1e-205 719.9 785 55.9
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 5.8e-203 711.8 810 54.9
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 4.3e-198 695.7 759 55.2
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 2.9e-194 682.9 863 50.5
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 3.2e-193 679.5 593 66.9
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.2e-192 677.6 811 52.3
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 6.0e-192 675.2 700 58.4
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 2.5e-185 653.3 816 50.4
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 1.0e-175 621.3 818 47.6
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.3e-165 587.8 554 63.4
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 9.1e-164 581.6 810 46.2
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 1.7e-154 550.8 664 51.5
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 6.1e-152 542.3 425 72.7
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 1.3e-146 524.6 580 56.4
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 2.3e-143 513.8 424 71.7
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 7.5e-134 482.3 446 63.0
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 3.9e-130 469.9 477 58.7
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 4.9e-117 426.4 386 62.2
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 1.2e-110 405.2 372 62.6
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 2.9e-101 374.0 358 60.3
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 1.7e-93 348.2 502 50.4
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 3.6e-88 330.5 445 48.5
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 1.7e-85 321.6 371 56.9
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 2.1e-83 314.7 817 31.5
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 2.4e-79 301.2 666 38.6
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 1.2e-78 298.9 272 63.2
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.0e-74 284.3 431 46.6
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 3.2e-68 264.2 814 29.5
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 3.6e-67 260.8 753 28.4
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 6.5e-61 240.0 791 27.8
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 7.9e-51 206.5 851 25.6
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 8.0e-43 179.9 136 70.6
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 3.6e-27 127.9 110 64.5
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 9.8e-25 119.8 161 52.2
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.3e-24 119.4 84 70.2
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 1.8e-23 115.5 105 64.8
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 5.0e-21 107.5 125 48.0
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 1.9e-20 105.5 94 59.6
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 2.1e-19 102.1 563 24.0
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.1e-19 102.1 154 44.2
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 1.8e-18 99.0 105 55.2
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 5.2e-18 97.4 70 70.0
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 4.9e-16 90.9 98 53.1
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 1.8e-15 89.0 156 36.5
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.1e-15 87.8 54 85.2
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.6e-14 84.3 197 32.5
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 3.0e-13 81.6 118 39.0
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 5.6e-12 77.4 67 59.7
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 5.6e-12 77.4 58 67.2
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 2.9e-08 65.1 41 75.6
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 4.6e-06 57.8 41 70.7


User provided reference genes

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