Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1888.2 979 100.0
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1781.9 1086 85.7
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1627.5 1094 76.7
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1614.0 1080 76.0
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1546.2 1088 73.7
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1536.9 1087 72.9
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1533.1 1084 71.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1530.8 1087 72.7
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1523.8 1082 72.7
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1521.5 1081 72.6
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1516.9 1084 71.0
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1502.6 1014 75.6
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1500.7 1078 70.5
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1500.0 1009 75.7
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1499.6 1012 74.3
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1493.0 1079 70.6
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1491.5 1014 75.2
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1491.5 1078 71.1
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1491.5 1088 70.4
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1484.5 1008 74.5
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1479.9 1023 73.5
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1479.5 1085 69.6
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1474.9 1009 73.1
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1474.1 1082 69.3
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1473.8 1009 73.1
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1473.4 1087 69.8
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1471.8 1084 69.2
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1471.1 1078 70.0
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1469.9 1084 70.3
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1466.8 1084 68.8
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1466.1 1084 69.1
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1465.7 1081 68.8
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1463.7 999 74.1
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1457.2 1084 68.6
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1454.9 1015 71.6
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1454.1 1009 72.4
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1454.1 1009 72.5
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1452.6 1080 68.1
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1449.9 1010 72.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1448.7 1082 68.9
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1448.0 1010 72.2
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1446.8 1009 71.8
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1443.3 1110 66.8
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1439.5 1083 68.8
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1436.0 1005 71.9
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1434.5 1079 68.8
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1432.5 1007 71.7
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1432.5 1010 71.4
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1431.4 1010 71.3
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1431.0 1082 67.0
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1428.7 1018 71.2
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1426.0 1087 67.6
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1423.3 1018 71.0
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1421.4 1084 67.7
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1419.8 1014 70.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1419.8 1014 70.4
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1412.5 1017 70.1
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1402.1 1014 69.9
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1397.5 1012 69.8
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1395.2 998 70.6
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1392.9 1046 69.2
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1390.9 1082 66.0
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1390.6 1016 69.4
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1390.2 1084 65.7
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1386.3 1091 65.1
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1384.0 1080 65.2
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1383.2 1015 69.5
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1381.3 1078 65.0
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1380.9 1006 69.0
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1379.8 1080 65.3
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1379.8 1080 65.3
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1379.8 1082 65.0
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1379.4 1080 65.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1379.4 1082 65.1
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1379.0 1082 65.2
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1378.6 1078 64.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1377.1 1005 69.4
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1376.3 1078 64.7
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1375.9 1080 65.4
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1375.5 1080 65.1
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1375.5 1080 65.1
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1375.5 1006 69.3
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1374.4 1080 65.0
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1372.5 1078 65.0
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1369.8 1007 69.1
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1368.6 1038 67.9
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1367.1 1080 64.9
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1365.5 1075 64.8
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1364.7 1004 68.8
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1364.0 1008 68.7
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1363.6 1015 68.4
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1361.7 1078 64.3
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1360.1 1007 68.1
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1358.2 1008 68.7
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1357.4 1013 69.5
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1355.1 1024 66.1
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1345.1 1001 67.3
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1337.8 1017 65.9
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1334.3 1008 68.3
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1333.5 1148 60.4
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1329.7 1010 67.0
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1329.7 1040 65.6
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1329.3 992 69.9
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1325.8 1049 64.6
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1321.6 1006 67.5
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1318.5 1015 67.2
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1315.8 1007 65.2
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1300.4 1081 61.5
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1299.6 1027 64.7
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1272.3 1008 62.6
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1246.5 906 69.6
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1076.2 721 75.9
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 2.7e-303 1045.4 731 72.9
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 5.6e-293 1011.1 1010 51.5
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 4.8e-292 1008.1 752 68.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.3e-291 1004.6 1005 51.3
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 6.9e-291 1004.2 1000 51.2
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 2.3e-286 989.2 1024 49.3
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 3.9e-286 988.4 1047 49.3
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 1.5e-277 959.9 689 72.3
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.1e-267 927.2 671 70.6
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 9.7e-261 904.0 833 55.8
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.7e-233 813.5 704 60.9
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.4e-227 793.9 956 45.7
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 8.0e-223 778.1 631 62.1
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.4e-219 766.5 541 73.8
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.9e-200 703.7 854 48.0
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.9e-187 660.6 624 58.5
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 3.2e-179 633.3 413 76.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.8e-167 593.6 603 52.1
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.8e-135 486.5 427 61.6
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 2.0e-125 454.5 388 62.6
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.0e-117 427.9 230 88.3
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.5e-104 382.9 274 70.8
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.4e-73 282.3 292 53.4
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 4.2e-70 270.8 244 58.6
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.5e-64 250.8 205 61.5
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 5.8e-64 250.4 136 83.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.2e-37 162.9 135 64.4
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 1.7e-34 152.5 151 55.6
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 4.8e-34 151.0 108 67.6
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.4e-30 139.4 72 88.9
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.6e-29 136.0 156 46.8
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 7.7e-24 117.1 79 72.2
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 8.5e-23 113.6 66 71.2
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 8.5e-23 113.6 97 58.8
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 4.2e-14 84.7 46 89.1
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 4.7e-13 81.3 149 38.9
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 2.3e-12 79.0 49 69.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 6.3e-10 70.9 44 81.8
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 4.2e-06 58.2 38 71.1


User provided reference genes

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