Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 5.6e-184 647.5 334 100.0
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 3.5e-138 495.4 354 76.8
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 2.0e-104 383.3 264 76.9
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 2.2e-103 379.8 360 61.4
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 1.1e-102 377.5 271 75.3
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 7.0e-102 374.8 263 76.4
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 7.0e-102 374.8 271 73.8
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 1.9e-99 366.7 268 73.5
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 2.5e-99 366.3 259 75.3
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 3.2e-99 365.9 261 74.3
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 5.5e-99 365.2 265 71.3
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 1.2e-98 364.0 262 73.7
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 2.7e-98 362.8 317 66.2
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 3.6e-98 362.5 263 74.1
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.4e-97 360.5 314 64.3
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 1.4e-97 360.5 262 74.0
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 1.4e-97 360.5 245 77.6
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 1.4e-97 360.5 250 75.2
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 1.8e-97 360.1 263 73.8
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 5.2e-97 358.6 308 66.2
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 1.5e-96 357.1 261 71.3
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.5e-96 357.1 273 71.8
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 2.6e-96 356.3 259 73.4
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 4.4e-96 355.5 245 76.7
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 4.4e-96 355.5 248 75.0
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 7.5e-96 354.8 295 66.4
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 6.3e-95 351.7 348 60.9
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 8.3e-95 351.3 248 74.2
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 1.4e-94 350.5 232 77.6
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 1.4e-94 350.5 264 69.3
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 2.4e-94 349.7 242 77.3
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 2.4e-94 349.7 242 77.3
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 4.1e-94 349.0 256 71.5
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 4.1e-94 349.0 255 71.8
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 5.4e-94 348.6 240 75.8
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 5.4e-94 348.6 242 76.9
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 7.0e-94 348.2 261 69.7
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.2e-93 347.4 242 76.4
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 2.7e-93 346.3 286 67.1
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 3.5e-93 345.9 241 76.8
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 3.5e-93 345.9 256 71.1
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 4.5e-93 345.5 254 73.2
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 5.9e-93 345.1 232 77.6
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 7.7e-93 344.7 238 76.1
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.7e-92 343.6 227 78.9
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 2.9e-92 342.8 245 73.1
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 8.5e-92 341.3 249 72.3
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 8.5e-92 341.3 253 71.5
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 1.5e-91 340.5 260 70.0
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 7.2e-91 338.2 270 67.8
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 9.4e-91 337.8 256 70.3
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 9.4e-91 337.8 298 63.4
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 1.2e-90 337.4 251 71.3
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 1.2e-90 337.4 256 69.9
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 2.1e-90 336.7 239 73.6
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 2.1e-90 336.7 338 58.9
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 2.1e-90 336.7 243 71.6
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 2.7e-90 336.3 243 72.0
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 3.6e-90 335.9 264 68.2
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 6.1e-90 335.1 243 72.0
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 1.4e-89 334.0 242 70.7
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 3.0e-89 332.8 253 69.2
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 3.0e-89 332.8 240 72.5
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 3.0e-89 332.8 226 75.2
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 5.2e-89 332.0 243 72.4
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 5.2e-89 332.0 248 71.0
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 8.8e-89 331.3 248 70.2
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 8.8e-89 331.3 297 64.0
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 8.8e-89 331.3 249 71.1
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 1.5e-88 330.5 248 71.0
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 1.5e-88 330.5 264 69.3
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 7.5e-88 328.2 248 70.2
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 7.5e-88 328.2 212 80.2
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 1.3e-87 327.4 259 66.0
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 1.7e-87 327.0 302 61.3
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 8.3e-87 324.7 223 75.3
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 1.8e-86 323.6 380 52.9
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 3.1e-86 322.8 257 65.8
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.6e-85 320.5 244 68.4
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 2.0e-85 320.1 238 69.7
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 2.3e-84 316.6 230 72.2
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 5.0e-84 315.5 241 68.5
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 6.6e-84 315.1 238 68.1
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 8.6e-84 314.7 254 65.0
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 1.5e-83 313.9 207 78.7
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 7.3e-83 311.6 216 74.5
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 7.3e-83 311.6 253 67.6
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 8.0e-82 308.1 354 52.0
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 1.8e-81 307.0 216 73.6
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 5.2e-81 305.4 235 71.1
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 2.6e-80 303.1 226 69.5
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 1.1e-78 297.7 316 55.1
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 1.8e-78 297.0 299 59.5
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 4.1e-78 295.8 234 66.2
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 9.2e-78 294.7 306 56.2
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 1.5e-75 287.3 262 61.1
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 2.8e-74 283.1 226 65.5
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 4.7e-74 282.3 230 63.9
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 6.2e-74 282.0 264 59.1
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 2.6e-72 276.6 226 67.7
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 2.6e-72 276.6 193 73.6
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 3.4e-72 276.2 263 58.2
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 2.4e-70 270.0 238 64.7
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 4.7e-66 255.8 248 58.5
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 2.2e-63 246.9 156 76.3
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 2.1e-61 240.4 264 53.0
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 4.6e-61 239.2 224 56.7
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 2.1e-58 230.3 255 49.0
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 1.2e-56 224.6 212 61.8
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 2.1e-53 213.8 176 66.5
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 4.6e-53 212.6 174 66.7
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 7.3e-51 205.3 206 57.8
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 3.9e-44 183.0 177 51.4
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 6.9e-33 145.6 162 53.7
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 4.9e-31 139.4 209 44.0
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 6.7e-28 129.0 260 39.2
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 8.7e-28 128.6 168 48.8
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 3.7e-26 123.2 130 55.4
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 4.8e-26 122.9 173 45.1
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 3.1e-25 120.2 145 48.3
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 3.4e-24 116.7 144 49.3
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 4.9e-23 112.8 73 74.0
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 1.1e-22 111.7 135 54.8
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.9e-19 100.9 65 70.8
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 3.4e-16 90.1 55 74.5
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 5.9e-16 89.4 219 31.1
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 1.0e-15 88.6 92 55.4
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 8.5e-15 85.5 249 29.7
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 1.4e-14 84.7 87 62.1
FAN13G2879 Fragaria x ananassa HOM05D005661 ORTHO05D046262 9.1e-09 65.5 177 35.6


User provided reference genes

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