Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.4e-270 935.6 463 100.0
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.0e-171 606.3 441 73.7
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.0e-143 514.2 481 59.7
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 1.3e-138 497.3 507 56.6
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 9.0e-132 474.6 481 56.8
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.7e-130 470.3 487 55.0
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.5e-126 456.4 485 53.6
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 2.0e-123 446.8 479 53.7
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.0e-123 446.8 477 54.5
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.7e-122 443.7 467 54.0
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 2.2e-122 443.4 467 53.5
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 3.8e-122 442.6 481 53.0
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 6.4e-122 441.8 477 54.5
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 1.4e-121 440.7 476 53.4
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 2.4e-121 439.9 481 53.4
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 3.2e-121 439.5 490 53.1
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.2e-120 437.6 489 52.6
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 3.5e-120 436.0 434 56.9
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.0e-119 434.5 481 52.4
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-119 433.7 474 53.4
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 3.9e-119 432.6 476 52.5
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.9e-118 430.3 492 52.6
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 2.1e-117 426.8 443 56.4
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.8e-117 426.4 485 52.4
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 6.2e-117 425.2 477 52.8
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.1e-116 424.5 486 52.3
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.4e-116 424.1 479 51.4
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.8e-116 423.7 461 53.8
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.1e-116 422.9 486 51.2
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 2.6e-115 419.9 485 53.4
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.0e-114 417.9 486 53.5
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.0e-111 407.9 474 50.6
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 3.3e-110 402.9 465 51.6
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.3e-109 401.0 477 49.9
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.4e-108 397.5 477 49.9
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 5.3e-108 395.6 486 48.4
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 6.9e-108 395.2 504 49.4
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 2.0e-107 393.7 439 52.6
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 5.0e-106 389.0 479 46.8
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 6.5e-106 388.7 479 47.0
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 5.5e-105 385.6 477 47.2
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.6e-104 384.0 467 49.9
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.3e-103 380.9 471 48.2
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.3e-103 380.9 471 48.2
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.1e-102 377.9 456 50.4
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 3.7e-101 372.9 471 47.3
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.3e-101 372.1 440 50.7
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 5.3e-100 369.0 463 49.5
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.2e-99 367.9 480 45.4
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.6e-99 366.7 404 51.0
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 3.8e-98 362.8 526 44.9
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.1e-94 351.3 465 43.0
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.5e-94 350.9 432 48.8
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.9e-90 336.7 473 45.7
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 7.2e-89 332.0 486 44.0
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-78 297.7 354 51.1
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 2.0e-78 297.4 387 46.5
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.7e-74 284.3 480 40.4
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.8e-71 274.2 464 37.9
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.3e-69 268.1 465 39.8
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.3e-66 258.1 334 48.8
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.4e-63 248.1 463 35.4
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.7e-62 242.7 470 35.1
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.8e-61 240.4 470 36.6
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 3.1e-60 236.9 470 34.7
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.1e-60 236.9 474 35.2
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 4.1e-60 236.5 463 36.7
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.7e-59 233.8 474 34.8
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.7e-58 231.1 452 36.3
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 3.8e-58 229.9 226 55.8
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 3.3e-57 226.9 472 34.5
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.6e-57 226.1 475 34.9
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 8.0e-56 222.2 461 37.5
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.0e-55 220.3 492 32.9
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 3.0e-55 220.3 462 32.5
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 2.4e-52 210.7 466 31.8
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 9.2e-52 208.8 467 31.7
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 9.2e-52 208.8 467 31.7
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 2.7e-51 207.2 467 31.5
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 2.7e-51 207.2 467 31.5
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 4.6e-51 206.5 466 32.2
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 3.9e-50 203.4 457 31.3
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 5.0e-50 203.0 452 31.4
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.9e-49 201.1 453 32.0
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 7.3e-49 199.1 171 60.2
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.2e-48 198.4 474 30.8
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.6e-48 198.0 482 32.2
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 6.2e-48 196.1 425 33.6
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 8.9e-47 192.2 462 31.8
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 8.9e-47 192.2 457 31.5
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.2e-46 191.8 403 34.7
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.0e-46 191.0 461 31.7
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.8e-46 189.5 379 33.5
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 9.8e-46 188.7 430 32.8
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 3.2e-44 183.7 254 45.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 3.2e-44 183.7 401 33.2
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 2.7e-43 180.6 387 34.6
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 6.0e-43 179.5 453 31.8
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 7.8e-43 179.1 288 43.4
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.3e-42 178.3 380 35.5
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 3.9e-42 176.8 460 31.3
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.0e-42 176.4 364 33.0
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.5e-41 174.1 133 61.7
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.2e-40 171.8 378 33.1
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.8e-40 170.6 383 31.6
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 5.8e-38 162.9 412 30.1
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.7e-37 161.4 371 32.3
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.7e-37 161.4 345 32.2
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 2.2e-37 161.0 436 29.1
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 5.4e-36 156.4 173 48.0
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.7e-35 154.1 162 45.7
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 6.0e-35 152.9 357 34.5
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.1e-33 148.7 105 68.6
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.3e-33 146.7 396 28.5
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.1e-32 144.4 399 29.3
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 6.2e-32 142.9 443 28.0
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 4.0e-31 140.2 403 27.5
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 5.2e-31 139.8 390 27.9
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-28 131.7 162 42.0
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.4e-28 131.7 391 27.4
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.6e-27 128.3 400 28.5
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.6e-27 126.7 405 30.9
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-25 122.1 144 51.4
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 3.3e-25 120.6 144 50.7
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.3e-25 120.2 378 28.0
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.6e-25 119.0 378 27.8
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 6.2e-24 116.3 323 28.5
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 8.1e-24 115.9 155 44.5
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.4e-23 115.2 417 27.1
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 5.2e-23 113.2 131 50.4
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 4.4e-22 110.2 214 39.3
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 4.4e-22 110.2 214 39.3
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.9e-21 107.5 158 41.8
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 3.8e-21 107.1 139 39.6
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.4e-20 104.4 416 26.9
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.6e-19 101.7 114 47.4
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.3e-18 98.6 121 39.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 3.9e-18 97.1 118 46.6
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 2.5e-17 94.4 66 66.7
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 5.6e-17 93.2 172 34.9
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 7.3e-17 92.8 104 40.4
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.9e-12 78.2 107 47.7
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 2.1e-08 64.7 100 34.0
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.8e-08 63.5 119 37.0
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 2.4e-07 61.2 67 44.8
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 5.3e-07 60.1 74 50.0
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.2e-06 58.9 74 41.9


User provided reference genes

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