Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 0.0e+00 1647.9 845 100.0
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 0.0e+00 1298.9 745 90.9
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 3.4e-286 988.4 769 70.6
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 6.6e-274 947.6 749 68.9
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 1.4e-204 717.2 756 55.2
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 5.9e-190 668.7 747 53.0
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.6e-182 644.0 767 52.8
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.3e-181 641.0 764 50.9
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 1.9e-180 637.1 763 51.5
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 3.6e-179 632.9 761 51.6
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 6.1e-179 632.1 753 52.6
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 1.5e-177 627.5 763 51.5
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 6.3e-176 622.1 780 52.9
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 2.0e-174 617.1 775 52.5
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.7e-174 616.7 820 49.1
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 8.6e-173 611.7 789 49.9
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 5.2e-170 602.4 754 49.3
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 1.5e-169 600.9 771 49.3
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 3.4e-169 599.7 764 49.5
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 1.7e-168 597.4 764 51.8
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 4.9e-168 595.9 772 49.5
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 1.9e-167 594.0 777 51.7
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 7.0e-167 592.0 754 50.7
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 3.5e-166 589.7 771 49.8
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 2.3e-165 587.0 790 48.2
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 2.1e-163 580.5 785 49.2
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 2.4e-159 567.0 790 45.4
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 5.4e-159 565.8 763 48.8
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 8.6e-157 558.5 832 45.9
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 8.6e-157 558.5 762 48.6
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 2.3e-154 550.4 764 49.3
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 2.6e-153 547.0 764 45.3
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 6.4e-152 542.3 894 40.2
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 3.2e-151 540.0 789 47.0
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 1.2e-150 538.1 763 45.2
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 7.8e-150 535.4 774 47.5
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.3e-149 534.6 781 47.0
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 2.5e-148 530.4 763 45.1
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 2.8e-147 526.9 924 38.6
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 1.3e-144 518.1 783 44.6
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 1.7e-144 517.7 775 46.3
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 4.9e-144 516.2 761 44.4
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 6.4e-144 515.8 769 46.3
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 1.1e-143 515.0 736 44.7
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 1.9e-143 514.2 776 46.5
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.9e-141 506.5 784 46.2
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 5.1e-141 506.1 770 46.2
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 9.6e-140 501.9 778 45.8
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 6.4e-136 489.2 764 44.0
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 3.0e-133 480.3 711 45.7
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 3.8e-128 463.4 723 42.2
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 9.3e-127 458.8 772 41.6
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 9.0e-122 442.2 764 41.8
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 2.6e-121 440.7 775 40.9
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 1.0e-120 438.7 770 41.8
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 4.9e-120 436.4 772 41.5
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 3.0e-117 427.2 762 42.1
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 6.7e-117 426.0 767 40.5
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 2.1e-115 421.0 746 39.8
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 4.8e-115 419.9 768 40.9
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 4.0e-114 416.8 745 40.5
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 2.0e-113 414.5 763 39.7
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 2.6e-113 414.1 745 40.3
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 1.1e-111 408.7 767 39.6
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 1.1e-111 408.7 767 39.9
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 1.4e-111 408.3 749 40.1
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.2e-110 405.2 771 39.0
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 2.7e-110 404.1 755 39.5
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 7.9e-110 402.5 752 39.0
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.0e-109 402.1 739 40.2
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 8.7e-109 399.1 737 40.7
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 1.5e-108 398.3 780 37.6
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 4.8e-107 393.3 747 39.1
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 8.2e-107 392.5 780 38.1
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 1.1e-106 392.1 780 37.4
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 4.1e-106 390.2 779 39.0
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 5.3e-106 389.8 773 38.3
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 2.2e-104 384.4 717 39.2
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 1.1e-103 382.1 770 37.3
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 4.6e-102 376.7 783 37.4
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 3.0e-101 374.0 803 37.7
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 1.5e-100 371.7 770 37.1
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 2.2e-99 367.9 783 38.2
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 3.7e-99 367.1 780 38.5
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.9e-95 354.8 744 39.0
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 1.0e-93 349.0 747 35.9
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 1.1e-92 345.5 752 37.1
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 2.2e-88 331.3 766 35.6
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 9.4e-87 325.9 772 35.2
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 1.2e-86 325.5 776 36.1
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 6.7e-85 319.7 768 34.4
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 1.2e-81 308.9 787 35.2
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 5.9e-81 306.6 782 35.9
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.3e-80 305.4 722 35.0
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 1.9e-79 301.6 766 35.0
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 7.2e-79 299.7 789 34.3
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 6.1e-78 296.6 743 36.9
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 3.0e-77 294.3 790 34.9
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 8.8e-77 292.7 795 34.1
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 8.8e-77 292.7 739 34.2
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 5.7e-76 290.0 688 34.7
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 1.3e-75 288.9 797 33.5
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 5.9e-73 280.0 764 34.7
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 1.3e-67 262.3 784 31.4
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 3.7e-67 260.8 736 32.9
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 8.3e-67 259.6 731 34.1
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 4.1e-66 257.3 725 34.6
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 3.5e-65 254.2 785 34.0
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 5.9e-65 253.4 303 52.8
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 6.6e-64 250.0 786 34.1
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 1.5e-63 248.8 760 32.0
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 1.9e-63 248.4 775 33.7
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 1.6e-62 245.4 783 33.1
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 2.8e-62 244.6 790 32.5
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 4.0e-61 240.7 789 32.2
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 4.0e-61 240.7 789 32.2
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 5.2e-61 240.4 802 32.5
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 8.9e-61 239.6 790 31.5
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 8.9e-61 239.6 790 31.5
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 2.2e-59 235.0 781 30.7
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.0e-53 216.1 728 30.2
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 1.4e-53 215.7 716 31.4
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 1.6e-49 202.2 565 34.3
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 1.5e-47 195.7 674 33.1
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 6.0e-41 173.7 184 53.3
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 4.3e-39 167.5 732 28.8
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 5.8e-36 157.1 781 28.6
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 1.3e-35 156.0 142 55.6
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 1.1e-31 142.9 573 31.6
Cfa016965 Carpinus fangiana HOM05D005664 ORTHO05D006509 2.8e-22 111.7 65 84.6
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 3.6e-22 111.3 785 26.2
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 8.4e-19 100.1 787 24.8
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 7.9e-17 93.6 811 24.4
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 1.1e-15 89.7 95 48.4
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 4.0e-13 81.3 116 38.8
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 3.8e-11 74.7 211 34.6
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 6.4e-11 73.9 55 67.3
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 2.1e-09 68.9 739 21.5
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 3.9e-08 64.7 243 25.5
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.1e-06 58.9 93 41.9


User provided reference genes

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