Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 0.0e+00 2927.9 1486 100.0
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 0.0e+00 2648.2 1486 91.5
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 0.0e+00 2004.9 1523 71.3
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 0.0e+00 1781.5 1508 66.2
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 0.0e+00 1490.3 1215 66.2
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 0.0e+00 1366.3 1530 52.9
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 0.0e+00 1336.2 1518 52.5
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 0.0e+00 1323.1 1521 53.0
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 0.0e+00 1266.5 1530 49.9
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 0.0e+00 1249.6 1533 50.2
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 0.0e+00 1227.2 1531 48.9
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 0.0e+00 1216.1 1515 50.2
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 0.0e+00 1214.5 1547 51.6
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 0.0e+00 1203.3 1539 48.5
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 0.0e+00 1192.2 1524 49.9
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 0.0e+00 1188.3 1537 50.2
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 0.0e+00 1187.6 1521 49.8
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 0.0e+00 1186.8 1531 48.0
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 0.0e+00 1186.0 1519 50.0
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 0.0e+00 1182.5 1531 48.1
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 0.0e+00 1174.8 1500 50.5
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 0.0e+00 1168.7 1546 47.9
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 0.0e+00 1164.8 1530 48.0
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 0.0e+00 1148.3 1524 47.7
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 0.0e+00 1132.9 1529 46.8
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 0.0e+00 1126.7 1549 46.3
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 0.0e+00 1110.1 1319 51.3
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 0.0e+00 1102.4 1533 47.7
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 0.0e+00 1101.7 1533 47.7
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 0.0e+00 1090.9 1533 47.5
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 0.0e+00 1076.2 1534 47.6
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.0e-311 1073.5 1531 47.2
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 9.8e-289 997.7 1531 45.1
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 9.8e-281 971.1 1579 44.4
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.4e-273 946.0 1519 43.2
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.1e-245 852.4 1571 39.7
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.2e-239 832.8 1577 39.6
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.4e-231 807.7 1440 40.8
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.4e-231 807.7 1441 40.9
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 3.1e-226 790.0 1513 39.8
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.0e-224 785.0 1499 40.0
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.1e-223 781.6 1508 39.6
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.4e-223 781.2 1379 40.6
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.4e-223 781.2 1499 39.9
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.9e-223 780.8 1438 40.0
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 8.7e-221 771.9 1608 40.6
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 3.3e-220 770.0 1283 43.5
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 7.4e-220 768.8 1390 41.2
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 2.8e-219 766.9 1529 39.5
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.3e-213 747.3 1543 39.3
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.0e-213 746.9 1544 39.2
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.0e-201 707.6 1488 38.4
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 2.6e-201 707.2 1515 37.4
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.0e-192 676.4 985 45.7
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 5.3e-186 656.4 1496 36.0
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 8.8e-181 639.0 1548 36.0
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 2.6e-180 637.5 1510 36.7
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 3.5e-177 627.1 1474 35.9
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 1.8e-173 614.8 1256 38.9
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 1.1e-167 595.5 1371 36.6
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 4.4e-164 583.6 1252 37.9
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 5.9e-161 573.2 1550 34.0
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 4.4e-156 557.0 1537 35.0
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.1e-154 552.4 1536 34.2
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.9e-154 551.6 1316 37.0
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.2e-153 548.9 1538 34.9
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 6.0e-153 546.6 1442 34.4
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 5.8e-148 530.0 1438 33.8
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 2.2e-147 528.1 1563 34.4
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 3.9e-144 517.3 1536 33.8
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 8.4e-139 499.6 1163 36.1
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.2e-131 474.9 1468 32.8
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 6.9e-125 453.4 1449 32.2
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 3.2e-122 444.5 843 40.5
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 7.9e-113 413.3 885 38.9
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.3e-111 407.9 1166 34.0
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 3.8e-107 394.4 1248 32.3
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 3.5e-105 387.9 1482 29.6
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.0e-104 386.3 1261 31.9
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 4.8e-102 377.5 1463 30.4
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 1.4e-101 375.9 830 37.1
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 1.1e-98 366.3 1526 29.8
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.5e-98 365.2 1284 32.5
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.1e-97 362.1 1125 32.8
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.3e-96 358.6 1135 31.7
Haze_08634 Corylus avellana HOM05D003788 ORTHO05D004633 3.9e-96 357.8 186 99.5
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 4.8e-94 350.9 1280 32.1
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 9.0e-93 346.7 1143 32.3
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 3.9e-88 331.3 1166 32.0
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.8e-80 305.8 786 36.3
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 8.5e-75 287.0 575 37.9
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.7e-73 282.0 538 39.8
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 6.1e-73 280.8 1127 29.1
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.6e-68 266.2 835 31.9
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 5.0e-67 261.2 481 39.7
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.1e-66 260.0 1131 28.9
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 4.2e-66 258.1 1133 29.0
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 5.5e-66 257.7 1133 29.2
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 4.0e-64 251.5 1163 29.1
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 3.4e-63 248.4 1239 27.8
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.7e-62 246.1 1436 27.1
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 5.4e-61 241.1 1125 28.8
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.2e-60 240.0 1140 29.4
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.3e-59 236.5 1169 28.2
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 5.0e-59 234.6 454 39.0
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 9.5e-58 230.3 703 31.7
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 2.8e-57 228.8 495 35.8
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 4.0e-56 224.9 1290 28.1
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 9.8e-55 220.3 977 28.9
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 6.3e-54 217.6 1157 27.7
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 2.7e-52 212.2 1157 27.4
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-51 209.9 1157 27.7
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 2.3e-51 209.1 552 33.9
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 2.9e-51 208.8 540 34.3
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.9e-51 208.8 551 34.5
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.1e-50 206.8 541 33.8
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 2.3e-48 199.1 481 34.5
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.3e-48 199.1 454 35.2
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.5e-47 196.4 1146 27.2
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.3e-46 193.4 521 35.1
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 2.9e-46 192.2 1160 26.1
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.9e-46 192.2 610 30.8
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 6.4e-46 191.0 515 35.1
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 6.4e-46 191.0 1160 26.1
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 6.4e-46 191.0 517 34.4
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.8e-45 189.5 444 36.3
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 3.3e-42 178.7 450 33.6
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 5.6e-42 177.9 423 34.5
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 5.6e-42 177.9 626 31.6
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 1.2e-41 176.8 1167 26.2
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-41 176.0 352 37.8
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 8.0e-41 174.1 514 32.5
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.0e-40 173.7 648 29.2
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 3.1e-40 172.2 510 32.0
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 4.0e-40 171.8 443 33.9
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.2e-40 171.4 1142 26.3
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-39 170.2 1160 24.7
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 1.2e-39 170.2 1160 24.7
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 9.8e-39 167.2 375 34.7
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.4e-37 163.3 505 31.9
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 3.2e-37 162.2 375 36.3
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 7.0e-37 161.0 374 35.6
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 9.2e-37 160.6 373 35.4
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 4.6e-36 158.3 374 35.0
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.7e-35 156.4 1171 25.6
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.7e-35 156.4 342 38.6
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 2.3e-35 156.0 422 32.2
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 3.0e-35 155.6 422 32.5
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 5.0e-35 154.8 569 29.7
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 6.6e-35 154.5 467 30.8
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 4.3e-34 151.8 1173 25.6
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 4.3e-34 151.8 572 30.1
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-33 150.2 1137 24.8
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-33 150.2 572 29.9
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.8e-32 144.4 562 30.1
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 2.6e-31 142.5 1182 23.9
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-30 140.2 1043 24.7
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 2.9e-30 139.0 216 44.0
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 2.9e-30 139.0 216 44.0
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 8.6e-27 127.5 1181 23.6
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.1e-25 122.9 395 29.1
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 1.4e-24 120.2 1200 23.2
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 5.1e-19 101.7 266 33.8
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.8e-17 95.9 447 28.0
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.6e-17 95.5 247 34.4
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.4e-16 93.6 142 38.7
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 6.6e-11 74.7 386 25.1
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 1.5e-10 73.6 273 27.8
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.8e-09 69.3 70 54.3
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 2.9e-06 59.3 159 29.6
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 2.9e-06 59.3 308 26.0
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 4.9e-06 58.5 336 24.7
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 4.9e-06 58.5 46 50.0
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 8.4e-06 57.8 39 64.1
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 8.4e-06 57.8 208 28.4


User provided reference genes

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