Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 3728.3 1866 100.0
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2909.0 2006 75.5
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2591.6 1906 70.9
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2584.7 1758 75.0
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2580.8 1905 70.1
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2573.5 1904 70.6
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2560.0 1904 69.8
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2558.1 1908 69.7
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2542.3 1904 69.4
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2535.4 1939 69.3
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2529.2 1908 68.6
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2519.6 1830 71.4
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2518.8 1904 68.2
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2516.9 1905 68.2
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2516.5 1904 68.7
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2512.3 1910 68.1
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2508.4 1830 70.7
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2506.9 1906 68.2
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2506.1 1904 68.6
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2501.1 1905 68.5
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2500.7 1920 67.4
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2500.3 1906 67.9
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2494.2 1908 68.1
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2491.5 1908 68.1
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2489.5 1892 68.4
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2488.4 1908 68.1
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2484.9 1908 68.0
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2473.7 1904 67.1
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2455.6 2008 64.5
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2445.6 2056 62.5
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2443.7 1908 66.1
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2443.3 1907 66.2
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2441.0 1922 67.1
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2432.5 1908 66.0
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2429.4 1907 65.8
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2427.5 1909 66.1
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2424.4 1892 67.2
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2410.9 1905 66.6
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2410.6 1903 65.5
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2406.3 1907 65.4
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2404.4 1907 65.2
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2401.3 1909 65.0
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2400.2 1903 64.8
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2385.5 1845 67.4
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2383.2 1904 65.7
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2380.1 1906 64.7
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2372.0 1918 65.5
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2361.6 1905 65.2
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2351.2 1988 61.8
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2351.2 1907 64.7
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2344.7 1905 65.0
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2337.0 1908 63.9
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2335.1 1910 63.7
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2334.3 1741 69.8
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2333.9 1909 64.2
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2333.5 1830 65.8
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2332.0 1908 63.7
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2327.0 1908 63.8
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2325.8 1908 63.8
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2325.1 1908 63.6
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2323.5 1908 63.7
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2323.1 1905 63.5
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2315.8 1908 63.5
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2315.8 1908 63.6
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2312.0 1908 63.5
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2311.2 1904 63.4
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2308.1 1908 63.2
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2308.1 1908 63.2
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2302.7 1904 63.2
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2296.5 1904 62.7
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2291.9 1903 62.7
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2289.6 1905 62.8
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2288.5 1903 62.7
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2288.1 1909 63.0
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2273.0 1900 61.5
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2268.8 1979 61.1
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2265.3 1903 62.3
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2263.0 1883 62.9
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2260.7 1905 61.8
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2251.5 1916 61.3
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2247.6 1943 61.3
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2244.2 1903 61.3
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2233.0 1904 61.9
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2221.4 1898 61.8
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2213.7 1932 60.8
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2207.6 1890 61.5
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2205.3 1908 60.4
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2201.8 1883 61.8
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2149.4 1918 60.0
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2133.6 1691 65.9
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2132.8 1929 58.3
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2111.6 1628 68.6
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2098.9 1904 59.1
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2078.1 1920 57.3
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2066.6 1911 57.8
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2017.7 1717 62.6
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1976.8 1579 64.5
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 1924.8 1824 58.1
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 1922.1 1905 54.2
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1896.3 1529 63.6
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1657.1 1317 66.1
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1588.5 1525 56.1
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1557.0 1171 67.1
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1531.9 1868 46.8
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1272.7 1946 39.2
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1257.3 2021 38.1
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1254.2 1951 39.1
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1232.6 962 64.9
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1217.6 1964 37.1
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1117.4 1930 36.7
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1091.6 929 62.9
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1078.5 1949 35.0
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 5.7e-302 1042.0 1926 34.5
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 6.1e-280 968.8 1932 33.3
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.7e-277 960.7 743 66.2
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 2.3e-255 887.1 2020 31.7
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 5.2e-255 885.9 964 52.9
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 2.1e-243 847.4 1195 43.9
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.1e-227 794.3 711 56.5
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 2.9e-205 720.7 509 72.7
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.4e-167 595.5 627 57.4
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 8.3e-128 463.4 638 47.6
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.8e-122 445.7 343 66.8
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 3.6e-115 421.4 1906 24.9
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.8e-114 417.2 459 47.9
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 4.3e-108 397.9 314 62.7
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.8e-104 384.8 531 42.4
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 3.9e-101 374.8 355 57.7
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.9e-92 345.9 322 57.5
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 2.4e-90 339.0 247 73.7
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 3.1e-90 338.6 248 65.3
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.8e-74 286.2 347 51.0
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 3.2e-71 275.4 1705 23.0
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.7e-70 272.3 246 56.1
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 8.5e-64 250.8 189 66.7
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 1.4e-63 250.0 345 45.2
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.5e-39 169.5 142 63.4
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 2.3e-37 162.9 96 83.3
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 5.7e-28 131.7 675 24.1
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 2.0e-25 123.2 101 66.3
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 6.6e-24 118.2 1983 19.3
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 5.2e-21 108.6 75 70.7
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 2.2e-19 103.2 76 60.5
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.0e-17 96.7 62 79.0
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 1.7e-16 93.6 74 68.9
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 6.6e-16 91.7 67 71.6
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 6.6e-16 91.7 65 73.8
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 2.8e-14 86.3 75 62.7
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 1.3e-11 77.4 61 65.6
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 2.2e-11 76.6 61 63.9
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 2.2e-11 76.6 68 52.9
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.7e-11 75.9 72 45.8
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 5.1e-08 65.5 54 53.7
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 1.5e-07 63.9 96 40.6
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 7.3e-07 61.6 82 48.8


User provided reference genes

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