Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.7e-134 482.6 242 100.0
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.5e-109 399.1 227 89.0
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 4.4e-98 361.7 227 80.6
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.6e-95 351.7 227 78.4
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.3e-94 350.1 227 77.1
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 4.7e-92 341.7 227 75.8
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-91 339.7 226 74.8
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 2.4e-91 339.3 227 76.7
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.2e-90 337.0 227 74.4
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 6.4e-89 331.3 228 71.9
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 9.3e-88 327.4 227 71.4
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 1.2e-87 327.0 227 70.9
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 2.1e-87 326.2 227 70.9
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 6.0e-87 324.7 227 73.1
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 6.0e-87 324.7 227 73.1
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.0e-86 323.9 227 70.0
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.7e-86 323.2 227 70.0
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 3.0e-86 322.4 227 72.2
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-85 320.5 227 72.2
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.5e-85 320.1 228 69.3
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 2.5e-85 319.3 229 69.9
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 4.3e-85 318.5 225 69.8
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 7.3e-85 317.8 226 68.6
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 7.3e-85 317.8 226 70.8
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 2.1e-84 316.2 261 63.6
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.1e-83 313.9 227 70.0
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.8e-83 313.2 226 69.9
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 3.1e-83 312.4 227 68.3
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 5.3e-83 311.6 226 68.6
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.9e-83 311.2 227 67.4
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.5e-82 310.1 227 67.0
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.0e-82 309.7 227 67.4
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 2.6e-82 309.3 225 66.7
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.6e-82 309.3 227 67.4
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.6e-82 309.3 227 67.4
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 3.4e-82 308.9 227 67.8
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 4.4e-82 308.5 226 68.1
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 5.8e-82 308.1 224 68.3
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.7e-81 306.6 227 67.0
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.7e-81 306.6 224 67.0
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.7e-81 306.6 227 68.7
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.7e-81 306.6 227 67.4
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 2.9e-81 305.8 224 67.4
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 2.9e-81 305.8 224 67.4
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 4.9e-81 305.1 224 67.0
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 2.4e-80 302.8 224 65.6
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.4e-80 302.8 229 66.8
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 3.2e-80 302.4 227 70.5
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 4.2e-80 302.0 224 68.8
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 4.2e-80 302.0 224 68.8
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.2e-80 302.0 228 67.1
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 7.1e-80 301.2 224 66.1
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 7.1e-80 301.2 216 69.0
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 7.1e-80 301.2 228 66.7
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.2e-79 300.4 224 66.1
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.2e-79 300.4 223 68.6
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.6e-79 300.1 224 66.1
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.1e-79 299.7 227 64.3
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 2.1e-79 299.7 227 65.6
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 2.7e-79 299.3 224 66.1
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.7e-79 299.3 224 65.2
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 2.7e-79 299.3 224 66.1
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 2.7e-79 299.3 224 66.1
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-79 298.9 224 65.2
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 3.5e-79 298.9 224 65.2
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 3.5e-79 298.9 226 67.3
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 4.6e-79 298.5 224 67.0
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.6e-79 298.5 227 67.0
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 6.0e-79 298.1 223 65.9
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 1.7e-78 296.6 224 65.6
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 1.7e-78 296.6 224 65.6
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 1.7e-78 296.6 224 65.6
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.7e-78 296.6 222 67.6
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.7e-78 296.6 223 67.3
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 2.3e-78 296.2 224 65.6
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 3.0e-78 295.8 226 67.3
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 3.0e-78 295.8 228 65.4
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 3.9e-78 295.4 223 65.5
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 3.9e-78 295.4 223 67.7
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 3.9e-78 295.4 227 67.8
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 6.6e-78 294.7 224 65.2
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 6.6e-78 294.7 222 66.7
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 8.7e-78 294.3 218 67.0
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 8.7e-78 294.3 222 67.6
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 1.5e-77 293.5 229 66.4
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 1.5e-77 293.5 226 65.9
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.9e-77 293.1 227 66.1
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.9e-77 293.1 222 68.0
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 2.5e-77 292.7 224 65.2
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 4.3e-77 292.0 227 66.5
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.1e-76 289.7 228 62.3
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.1e-76 289.7 223 65.5
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.6e-76 288.9 227 65.2
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.4e-75 287.0 227 60.4
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.4e-75 287.0 228 61.8
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.4e-75 287.0 231 64.5
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.1e-75 285.8 234 62.0
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 3.1e-75 285.8 227 64.3
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 3.1e-75 285.8 223 65.5
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.0e-75 285.4 227 64.8
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 9.0e-75 284.3 227 64.8
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.5e-74 283.5 227 64.3
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 2.0e-74 283.1 220 64.1
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 1.7e-73 280.0 228 64.0
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.7e-73 280.0 227 63.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.8e-73 278.9 229 61.1
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 3.2e-72 275.8 225 62.2
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 9.3e-72 274.2 226 62.8
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.6e-71 273.5 227 61.2
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.8e-70 270.0 227 57.7
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 3.3e-69 265.8 227 61.7
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 5.6e-69 265.0 228 60.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.6e-68 263.5 225 60.0
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.1e-68 263.1 225 59.6
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 2.9e-65 252.7 227 53.3
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.9e-64 250.0 230 54.3
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 3.5e-63 245.7 217 59.0
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.3e-60 237.3 232 53.9
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 2.1e-60 236.5 227 55.9
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.8e-58 228.4 141 80.9
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.4e-56 223.8 142 77.5
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.1e-54 215.3 235 47.7
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 8.7e-54 214.5 137 75.2
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 8.2e-52 208.0 226 53.1
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.4e-51 206.5 229 49.8
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.2e-50 204.1 142 72.5
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.5e-50 203.8 149 73.2
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 2.6e-50 203.0 233 46.4
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.0e-49 201.1 144 72.2
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.1e-43 179.5 172 54.7
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 5.3e-43 178.7 128 69.5
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 5.1e-38 162.2 229 41.0
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.1e-35 152.9 203 46.8
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 4.5e-26 122.5 122 53.3
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 1.3e-25 120.9 215 34.9
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 8.5e-25 118.2 65 81.5
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 2.5e-24 116.7 216 33.8
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.6e-23 114.0 77 63.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.7e-23 112.5 157 42.7
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 4.0e-22 109.4 69 75.4
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 5.2e-22 109.0 128 45.3
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 9.1e-19 98.2 223 32.3
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.0e-18 97.1 69 69.6
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 8.5e-17 91.7 63 69.8
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 7.2e-16 88.6 51 78.4
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 5.4e-11 72.4 70 64.3
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.0e-11 72.0 50 68.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.0e-11 72.0 50 68.0
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 2.9e-09 66.6 51 60.8
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 8.6e-09 65.1 69 50.7
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.9e-08 63.9 70 44.3
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 5.2e-06 55.8 80 41.2
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 8.9e-06 55.1 71 49.3


User provided reference genes

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