Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 1.1e-210 736.9 520 100.0
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.3e-200 703.4 525 95.4
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 1.5e-135 487.3 531 76.1
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 7.0e-125 451.8 514 74.1
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 5.0e-123 445.7 493 76.9
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 8.8e-120 434.9 537 67.2
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.4e-119 433.0 521 72.2
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 3.7e-118 429.5 521 71.8
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.9e-118 429.1 521 71.6
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 6.3e-118 428.7 513 71.7
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 1.4e-117 427.6 521 71.6
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.4e-117 427.6 521 71.6
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 2.5e-114 416.8 520 71.2
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 3.0e-112 409.8 523 67.1
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 4.9e-110 402.5 504 71.4
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 1.2e-108 397.9 486 73.3
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 3.5e-108 396.4 386 84.7
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 5.9e-108 395.6 467 72.2
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 7.8e-108 395.2 481 71.7
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 7.8e-108 395.2 526 67.9
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 1.3e-107 394.4 481 71.7
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.3e-107 393.7 481 71.7
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 9.5e-106 388.3 517 68.1
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 2.1e-105 387.1 517 68.7
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 3.6e-105 386.3 472 72.2
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 4.7e-105 386.0 529 70.1
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 6.2e-105 385.6 472 72.2
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 8.0e-105 385.2 472 72.2
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 8.0e-105 385.2 481 71.5
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 8.0e-105 385.2 481 71.5
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 1.8e-104 384.0 470 71.1
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 3.1e-104 383.3 499 68.7
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 4.0e-104 382.9 479 69.9
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 6.8e-104 382.1 536 66.6
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 1.5e-103 380.9 532 65.0
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 3.4e-103 379.8 481 70.7
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 2.4e-101 373.6 526 67.5
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 5.4e-101 372.5 518 58.5
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 9.2e-101 371.7 501 69.1
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 7.8e-100 368.6 525 66.1
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 3.9e-99 366.3 518 64.9
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 1.1e-98 364.8 520 66.0
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 2.5e-98 363.6 522 68.2
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 3.3e-98 363.2 505 67.1
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 4.7e-97 359.4 479 68.9
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 2.3e-96 357.1 524 63.4
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 8.9e-96 355.1 519 67.6
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 2.0e-95 354.0 474 71.3
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.0e-95 354.0 520 66.0
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.2e-94 350.5 528 63.8
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 1.1e-93 348.2 416 72.8
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 2.4e-93 347.1 482 69.1
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 2.4e-93 347.1 413 71.7
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 4.1e-93 346.3 521 65.6
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 7.1e-93 345.5 520 64.8
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 9.2e-93 345.1 480 69.8
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.2e-92 344.7 519 62.6
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 1.2e-92 344.7 515 63.5
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 2.1e-92 344.0 530 63.4
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 1.9e-90 337.4 515 62.7
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 4.3e-90 336.3 537 62.6
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 5.6e-90 335.9 338 85.2
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 7.3e-90 335.5 483 64.4
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 1.1e-88 331.6 523 61.8
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 1.8e-88 330.9 514 60.3
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 3.4e-87 326.6 478 64.4
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 9.9e-87 325.1 535 57.4
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 3.7e-86 323.2 467 68.7
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 3.7e-86 323.2 487 62.8
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 2.1e-84 317.4 485 63.5
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 2.1e-84 317.4 471 63.3
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.0e-83 315.1 450 63.6
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 9.6e-82 308.5 482 63.3
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 1.2e-81 308.1 477 64.2
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 2.1e-81 307.4 490 60.8
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 2.8e-81 307.0 472 64.6
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 4.7e-81 306.2 413 69.2
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 4.7e-81 306.2 489 61.3
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 6.2e-81 305.8 472 66.9
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 1.2e-79 301.6 534 58.1
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 4.4e-79 299.7 416 69.0
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.7e-78 297.7 512 59.2
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 1.7e-78 297.7 479 63.3
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.4e-77 294.7 534 56.6
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.2e-76 291.6 478 60.7
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.6e-76 291.2 483 62.5
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 7.8e-76 288.9 503 58.1
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.1e-74 285.0 484 56.6
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 1.5e-71 274.6 530 57.9
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 2.0e-71 274.2 292 86.6
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 2.0e-71 274.2 500 57.8
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 3.8e-70 270.0 497 59.0
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 2.1e-68 264.2 475 58.9
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 1.5e-63 248.1 276 57.6
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 6.0e-60 236.1 349 69.1
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 7.9e-60 235.7 465 56.6
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.8e-59 234.6 487 57.3
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 8.7e-59 232.3 292 81.8
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 6.2e-57 226.1 375 61.3
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 3.9e-51 206.8 299 59.5
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.4e-48 198.4 336 50.0
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 1.0e-46 192.2 292 73.6
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 1.2e-44 185.3 235 84.3
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 3.0e-43 180.6 482 52.3
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 5.1e-43 179.9 470 32.1
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 3.3e-42 177.2 480 52.1
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 7.4e-42 176.0 290 71.4
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 2.8e-41 174.1 119 88.2
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 4.4e-34 150.2 515 33.4
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 2.2e-33 147.9 137 58.4
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 2.2e-30 137.9 98 71.4
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 3.5e-23 114.0 291 32.6
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 4.2e-21 107.1 322 52.2
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 7.2e-21 106.3 388 50.3
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 6.7e-19 99.8 314 51.3
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.5e-18 98.6 328 50.3
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 1.1e-16 92.4 103 48.5
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 3.4e-10 70.9 118 48.3
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 7.5e-10 69.7 126 31.0
BcaNung06726 Brassica carinata HOM05D006454 ORTHO05D008024 3.8e-06 57.4 136 38.2


User provided reference genes

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