Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 0.0e+00 1530.4 734 100.0
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 6.1e-292 1007.3 502 95.6
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 2.3e-238 829.3 511 79.8
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 9.0e-227 790.8 517 77.0
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 6.0e-223 778.1 517 74.9
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.2e-216 755.7 506 74.7
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 9.3e-216 754.2 520 73.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.6e-215 753.4 505 74.5
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 2.1e-215 753.1 504 73.8
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.0e-215 751.5 504 73.6
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.3e-214 750.4 508 72.6
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.3e-212 743.8 514 73.2
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.4e-211 739.6 514 71.6
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 3.1e-211 739.2 525 69.9
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 4.0e-211 738.8 510 72.0
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 5.8e-210 734.9 509 72.9
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.0e-209 734.2 523 69.2
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.9e-208 729.9 510 70.0
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.2e-208 729.2 516 70.3
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 4.2e-208 728.8 513 71.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 4.2e-208 728.8 509 70.9
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 7.1e-208 728.0 522 70.1
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 9.3e-208 727.6 510 72.0
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.2e-207 727.2 510 70.8
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.7e-207 726.1 514 69.6
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.3e-206 723.0 510 70.4
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.0e-206 722.6 518 70.8
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 3.9e-206 722.2 522 69.5
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 5.1e-206 721.8 511 69.9
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.1e-206 721.8 511 70.8
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 5.1e-206 721.8 515 70.9
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.7e-206 721.5 505 71.3
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.7e-206 721.5 505 71.3
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.9e-205 719.9 522 69.9
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.3e-204 717.2 508 70.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 2.8e-204 716.1 510 69.6
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 8.2e-204 714.5 507 70.0
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-203 714.1 510 70.6
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-203 714.1 510 70.6
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.8e-203 713.4 528 66.9
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.1e-203 712.6 513 68.2
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 5.3e-203 711.8 516 69.0
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 6.9e-203 711.4 525 68.0
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.0e-202 709.9 512 68.0
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 2.0e-202 709.9 541 67.5
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.0e-201 707.6 550 64.9
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.7e-201 706.8 520 66.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 8.4e-201 704.5 507 68.2
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 4.2e-200 702.2 507 71.6
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.6e-199 700.3 511 68.5
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.6e-199 700.3 527 66.6
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 2.7e-199 699.5 510 68.6
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.6e-199 698.7 525 66.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.0e-198 697.6 530 65.8
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.0e-198 697.6 530 65.8
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.3e-198 697.2 515 68.5
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.8e-198 696.8 504 69.4
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 8.7e-198 694.5 535 66.2
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 5.7e-197 691.8 504 69.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.8e-196 689.5 512 67.0
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.7e-196 689.1 509 68.6
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.3e-196 688.3 509 68.6
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.8e-195 686.8 473 71.7
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 2.4e-195 686.4 512 67.0
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 3.1e-195 686.0 532 65.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 3.1e-195 686.0 540 65.4
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 3.1e-195 686.0 540 65.4
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 7.7e-194 681.4 517 65.6
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 7.7e-194 681.4 506 66.6
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.7e-193 680.2 510 67.6
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.7e-193 680.2 500 65.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 5.0e-193 678.7 523 65.0
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.4e-192 677.2 508 67.7
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 7.2e-192 674.9 531 65.2
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 1.4e-190 670.6 503 65.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.1e-189 667.5 524 63.7
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.0e-189 666.8 535 62.8
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 7.4e-189 664.8 530 63.2
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.7e-188 663.7 507 64.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 6.3e-188 661.8 532 63.2
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.8e-187 660.2 532 63.2
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 9.1e-187 657.9 535 63.4
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 2.6e-186 656.4 525 63.8
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 7.7e-186 654.8 535 63.4
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 7.7e-186 654.8 547 62.2
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.5e-185 651.7 525 62.5
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.4e-184 650.6 525 63.4
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.2e-183 647.5 542 62.4
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-183 647.5 525 62.7
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.6e-183 647.1 539 62.5
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.0e-182 644.4 526 61.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.2e-180 636.7 520 62.7
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 8.2e-180 634.8 393 78.1
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.1e-179 634.4 509 61.9
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 3.5e-178 629.4 454 65.9
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.3e-177 627.5 517 62.5
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.2e-177 626.7 529 61.2
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.5e-176 623.2 470 62.6
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 3.2e-176 622.9 514 63.6
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 9.4e-176 621.3 529 60.5
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.0e-175 618.2 474 63.5
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 2.3e-174 616.7 452 66.6
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.0e-174 616.3 481 63.6
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 3.0e-174 616.3 510 62.2
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 3.0e-174 616.3 516 61.0
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 4.0e-174 615.9 508 62.0
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 4.4e-173 612.5 442 67.9
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.8e-166 590.5 467 64.2
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.5e-165 587.4 446 65.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 3.6e-159 566.2 447 62.2
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.0e-153 548.1 311 83.0
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.3e-153 547.0 383 70.0
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.3e-153 547.0 295 87.5
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 3.0e-150 536.6 471 59.2
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 5.2e-150 535.8 429 64.1
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.2e-146 524.6 311 77.2
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 5.2e-142 509.2 303 79.5
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 7.5e-133 478.8 311 71.1
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 7.6e-125 452.2 383 61.6
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 4.1e-123 446.4 519 43.5
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 6.0e-122 442.6 288 70.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 9.9e-117 425.2 238 86.1
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.1e-114 417.5 498 43.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 4.6e-114 416.4 581 41.0
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 6.0e-114 416.0 246 81.3
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 7.8e-114 415.6 239 81.6
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 4.0e-94 350.1 519 44.7
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 4.6e-90 336.7 196 81.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 4.8e-87 326.6 309 55.3
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 5.0e-84 316.6 200 74.5
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 8.4e-84 315.8 339 54.0
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.8e-81 308.1 279 58.4
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.3e-73 281.2 270 57.0
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 3.0e-73 280.8 166 81.3
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 8.2e-63 246.1 217 59.4
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 7.0e-54 216.5 224 54.0
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.0e-53 214.9 224 53.6
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.7e-52 211.8 157 68.2
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-51 208.4 129 72.1
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.9e-51 208.4 129 72.1
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-51 208.4 432 31.2
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.5e-51 208.0 124 75.0
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.8e-47 194.5 189 50.3
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.0e-45 188.3 108 82.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.3e-39 169.1 106 69.8
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.1e-35 156.0 164 51.2
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 5.6e-35 153.7 177 48.6
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.6e-35 153.7 98 77.6
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.8e-34 151.4 166 50.6
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.5e-32 145.6 262 39.7
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 3.4e-32 144.4 214 38.3
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.1e-30 139.4 254 37.4
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.0e-29 135.2 266 37.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 5.9e-29 133.7 76 77.6
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 5.9e-29 133.7 76 77.6
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 5.0e-28 130.6 186 44.1
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 3.3e-27 127.9 85 67.1
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.3e-27 127.5 103 63.1
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.5e-21 107.8 90 62.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 9.5e-19 99.8 59 74.6
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-17 95.5 72 66.7
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 5.1e-12 77.4 89 48.3
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.6e-08 65.1 35 91.4
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 5.8e-08 63.9 152 36.2


User provided reference genes

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