Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 0.0e+00 1107.4 559 100.0
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.7e-311 1071.2 590 93.1
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.9e-290 1001.9 595 86.6
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 4.2e-285 984.2 591 84.8
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 3.0e-275 951.4 591 83.1
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 4.4e-274 947.6 590 82.5
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.2e-271 939.5 589 82.0
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 5.2e-267 924.1 594 80.3
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.5e-266 922.5 601 79.9
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.5e-266 922.5 593 79.8
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 3.3e-266 921.4 597 80.1
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 5.7e-266 920.6 592 80.6
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 9.7e-266 919.8 581 81.4
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.7e-265 919.1 594 79.3
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 2.8e-265 918.3 592 79.7
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 2.4e-264 915.2 597 79.7
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 4.1e-264 914.4 594 79.6
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 7.0e-264 913.7 603 78.6
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 9.1e-264 913.3 592 79.4
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 1.2e-263 912.9 592 80.1
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.7e-262 909.1 591 78.8
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.2e-262 908.7 585 79.3
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 2.2e-262 908.7 578 79.1
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 2.9e-262 908.3 591 78.0
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 3.8e-262 907.9 594 78.8
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.0e-262 907.5 561 82.4
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.5e-261 906.0 591 78.8
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.2e-261 904.8 585 78.8
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 5.5e-261 904.0 564 80.1
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 3.6e-260 901.4 599 78.1
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 4.7e-260 901.0 592 77.9
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 8.0e-260 900.2 594 78.3
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 8.0e-260 900.2 575 79.1
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.3e-259 898.7 592 78.5
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 3.0e-259 898.3 591 76.8
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.0e-259 897.9 600 77.8
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 4.0e-259 897.9 570 78.8
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 5.2e-259 897.5 590 78.0
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.6e-258 895.2 604 77.5
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 4.4e-258 894.4 592 77.2
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 5.7e-258 894.0 593 78.2
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 5.7e-258 894.0 547 82.3
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 9.8e-258 893.3 578 78.2
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.7e-257 892.5 592 77.7
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 2.2e-257 892.1 616 76.3
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 2.2e-257 892.1 585 78.3
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 2.2e-257 892.1 590 76.8
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.8e-257 891.7 602 77.6
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 2.8e-257 891.7 594 77.9
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 6.3e-257 890.6 594 77.8
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 1.8e-256 889.0 590 76.6
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.8e-256 889.0 595 77.3
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 2.4e-256 888.6 593 76.7
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 2.4e-256 888.6 569 78.7
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 2.4e-256 888.6 592 76.7
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 2.4e-256 888.6 547 81.0
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 2.4e-256 888.6 595 77.3
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 3.1e-256 888.3 591 77.2
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.1e-256 888.3 614 75.9
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 3.1e-256 888.3 576 79.0
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 9.1e-256 886.7 594 77.3
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.6e-255 885.9 588 77.4
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 2.7e-255 885.2 595 77.0
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 3.5e-255 884.8 617 75.0
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 5.9e-255 884.0 550 80.7
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 7.7e-255 883.6 585 76.8
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.0e-254 883.2 594 76.3
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 8.6e-254 880.2 593 76.6
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.5e-253 879.4 591 75.8
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 3.3e-253 878.2 549 79.8
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 4.2e-253 877.9 591 76.5
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 7.2e-253 877.1 610 75.7
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.6e-252 875.9 574 78.9
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 4.7e-252 874.4 594 75.6
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.0e-251 873.2 592 75.2
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.4e-251 872.8 598 74.9
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 8.9e-251 870.2 590 75.3
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 3.4e-250 868.2 592 75.2
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 4.4e-250 867.8 590 74.9
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 2.2e-249 865.5 593 75.5
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 3.7e-249 864.8 587 76.0
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 4.9e-249 864.4 575 76.0
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 6.3e-249 864.0 595 74.6
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.4e-248 862.8 578 75.6
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 3.6e-244 848.2 612 72.1
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.8e-243 845.9 630 72.1
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.6e-242 842.0 623 71.6
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 4.6e-239 831.2 593 71.2
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 7.8e-239 830.5 636 70.0
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.7e-238 829.3 590 74.7
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 3.0e-238 828.6 644 69.6
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.6e-236 822.8 590 74.2
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 3.6e-236 821.6 587 71.2
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 5.8e-234 814.3 560 75.7
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 2.4e-232 808.9 579 74.1
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 2.0e-231 805.8 541 73.8
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 2.7e-231 805.4 579 73.7
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.7e-230 802.7 520 79.6
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 8.6e-230 800.4 586 72.5
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 8.6e-230 800.4 479 83.3
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.5e-229 797.0 609 70.6
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 2.3e-227 792.3 568 72.2
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 2.7e-215 752.3 602 64.8
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 7.8e-215 750.7 547 67.8
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 5.6e-213 744.6 455 80.2
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 1.1e-211 740.3 541 68.6
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 3.4e-210 735.3 532 69.7
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 1.7e-209 733.0 546 66.8
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.3e-206 722.6 485 77.1
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.8e-204 715.7 580 66.0
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 3.5e-199 698.7 500 71.6
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 3.4e-178 629.0 530 60.8
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.0e-174 617.5 397 78.1
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 5.1e-174 615.1 524 64.3
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 7.9e-167 591.3 523 61.6
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 5.5e-160 568.5 322 87.6
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 8.0e-151 538.1 510 55.9
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 3.0e-150 536.2 410 69.0
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 2.7e-146 523.1 322 81.4
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 6.8e-142 508.4 544 49.1
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 4.4e-133 479.2 257 90.7
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 1.0e-129 468.0 552 48.9
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 5.3e-94 349.4 238 75.2
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 8.1e-87 325.5 176 85.8
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.7e-76 291.2 384 49.5
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 9.4e-59 232.3 208 58.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 4.7e-50 203.4 131 70.2
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 9.1e-46 189.1 160 70.0
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 1.2e-45 188.7 153 65.4
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 4.5e-45 186.8 116 81.9
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 7.4e-40 169.5 102 80.4
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 6.3e-31 139.8 314 32.5
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 8.5e-28 129.4 106 59.4
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 4.7e-26 123.6 312 32.7
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.4e-25 122.1 76 84.2
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 3.8e-20 104.0 57 84.2
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.2e-18 99.0 59 83.1
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 7.5e-16 89.7 148 41.9
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 5.4e-14 83.6 85 58.8
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.2e-13 82.4 42 85.7
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 3.5e-13 80.9 45 77.8
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 1.0e-12 79.3 126 41.3
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 3.9e-12 77.4 107 44.9
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 2.8e-10 71.2 42 78.6
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 8.9e-09 66.2 70 58.6
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 2.0e-08 65.1 35 80.0
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 1.3e-07 62.4 37 81.1
Lsat_1_v5_gn_5_36061 Lactuca sativa HOM05D004902 ORTHO05D025756 2.4e-06 58.2 44 61.4
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 9.2e-06 56.2 112 36.6


User provided reference genes

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