Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 3.9e-204 714.5 349 100.0
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 1.2e-173 613.2 346 87.6
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 3.3e-163 578.6 344 82.8
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 4.5e-160 568.2 344 80.8
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 5.1e-156 554.7 347 79.8
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 4.8e-154 548.1 346 77.2
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 3.1e-153 545.4 346 78.0
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 2.0e-152 542.7 325 82.2
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 1.3e-151 540.0 346 78.0
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 6.5e-151 537.7 323 81.1
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.9e-150 536.2 325 79.4
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.5e-150 535.8 346 74.9
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 2.5e-150 535.8 346 75.4
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 7.9e-149 530.8 346 76.6
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.8e-148 529.6 340 74.7
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.3e-148 529.3 323 78.9
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.3e-148 529.3 323 78.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 4.4e-147 525.0 325 78.5
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 7.4e-147 524.2 346 74.0
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 9.7e-147 523.9 346 75.4
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 6.3e-146 521.2 337 74.2
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 8.2e-146 520.8 325 75.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.1e-145 520.4 346 73.7
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.1e-145 520.4 346 74.6
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.1e-145 520.4 346 74.6
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.1e-145 520.4 346 74.6
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.1e-145 520.4 325 75.7
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.8e-145 519.6 347 72.6
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 3.1e-145 518.8 323 77.4
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 5.3e-145 518.1 325 77.5
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 9.1e-145 517.3 346 74.0
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.6e-144 516.5 346 72.8
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.0e-144 516.2 346 73.1
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 1.3e-143 513.5 325 77.2
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 3.8e-143 511.9 345 71.9
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 5.0e-143 511.5 348 72.7
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.1e-142 510.4 346 73.1
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.9e-142 509.6 346 71.1
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 2.5e-142 509.2 346 72.5
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 2.5e-142 509.2 325 76.9
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 3.2e-142 508.8 319 76.2
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.5e-142 508.1 346 72.8
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 7.2e-142 507.7 325 76.6
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.6e-141 506.5 337 73.6
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 2.7e-141 505.8 346 71.7
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.7e-141 505.0 346 72.3
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.3e-140 502.7 346 69.7
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 6.7e-140 501.1 337 71.8
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 7.5e-139 497.7 343 70.6
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.1e-137 493.8 347 71.2
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.4e-137 493.4 347 70.9
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 5.3e-137 491.5 342 70.2
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 2.0e-136 489.6 346 68.8
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 2.7e-136 489.2 341 69.2
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.7e-136 489.2 323 72.8
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 3.5e-136 488.8 347 70.3
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 3.5e-136 488.8 346 67.9
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.9e-135 485.7 347 69.2
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 5.0e-135 485.0 346 67.9
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 5.0e-135 485.0 346 67.9
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 6.5e-135 484.6 346 67.3
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 4.2e-134 481.9 329 71.1
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 5.5e-134 481.5 346 67.3
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 5.5e-134 481.5 323 72.1
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 3.6e-133 478.8 325 70.5
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 3.6e-133 478.8 339 68.1
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 6.1e-133 478.0 339 67.3
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 6.1e-133 478.0 347 67.4
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 6.1e-133 478.0 344 66.9
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 8.0e-133 477.6 346 67.9
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.0e-132 477.2 346 66.8
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.8e-132 476.5 346 67.1
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 2.6e-131 472.6 322 71.1
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 3.4e-131 472.2 346 67.1
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 3.4e-131 472.2 346 67.1
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 1.7e-130 469.9 318 69.5
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 3.7e-130 468.8 340 66.5
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.8e-130 468.4 346 65.9
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 8.3e-130 467.6 343 67.9
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 8.3e-130 467.6 340 66.5
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.1e-129 467.2 322 69.6
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.4e-129 466.8 327 68.5
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 5.4e-129 464.9 346 65.0
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 7.0e-129 464.5 346 65.9
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 9.1e-129 464.2 311 70.7
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 2.9e-127 459.1 347 66.0
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 2.9e-127 459.1 346 64.5
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.1e-126 457.2 354 64.7
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.2e-125 453.8 318 70.1
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 4.7e-125 451.8 344 68.0
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.5e-123 446.8 340 62.4
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 2.6e-123 446.0 346 65.0
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 3.4e-123 445.7 346 67.9
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 3.7e-122 442.2 342 60.2
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.2e-120 437.2 321 65.7
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 1.1e-118 430.6 337 61.1
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.9e-118 429.9 325 64.0
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.9e-118 429.9 343 61.5
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 2.1e-117 426.4 317 64.7
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 2.8e-117 426.0 323 65.3
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.6e-117 425.6 350 58.3
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.7e-114 416.8 321 65.1
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.1e-113 414.1 322 61.8
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 3.2e-113 412.5 346 57.5
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 7.0e-113 411.4 298 68.5
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.6e-112 410.2 346 57.8
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.0e-112 409.8 258 74.4
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.7e-112 409.5 315 62.2
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.3e-111 407.1 337 58.2
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 3.9e-111 405.6 337 57.9
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.2e-109 400.6 343 61.5
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.0e-108 397.5 277 67.9
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 7.5e-107 391.3 338 57.1
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.7e-106 390.2 339 56.6
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 2.2e-106 389.8 365 55.3
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.4e-105 386.3 261 72.4
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.2e-104 384.0 339 56.3
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 2.3e-103 379.8 341 55.4
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.2e-101 374.0 337 56.4
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 8.4e-90 334.7 217 77.4
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 5.1e-87 325.5 315 55.9
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 8.6e-87 324.7 326 50.9
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.2e-85 320.9 276 56.9
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.8e-85 319.7 373 47.7
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 2.4e-84 316.6 239 69.0
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 9.3e-81 304.7 218 70.6
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.0e-79 301.2 342 49.1
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 5.6e-78 295.4 345 47.5
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.1e-76 291.2 192 70.3
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 5.3e-76 288.9 337 46.9
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 3.4e-67 259.6 264 51.9
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 3.4e-67 259.6 396 38.9
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.9e-65 253.8 184 68.5
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.1e-57 228.0 155 69.7
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 3.0e-55 219.9 189 54.0
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 7.2e-49 198.7 389 33.9
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 2.8e-45 186.8 148 62.2
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.4e-44 184.5 325 39.1
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.4e-44 183.7 143 61.5
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 5.9e-43 179.1 122 68.9
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 1.3e-42 177.9 249 41.4
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 5.5e-41 172.6 131 63.4
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 5.5e-41 172.6 131 63.4
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 8.8e-31 138.7 91 70.3
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 4.8e-29 132.9 151 49.0
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 7.7e-27 125.6 118 57.6
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 7.2e-25 119.0 98 62.2
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 1.3e-18 98.2 287 27.2
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 2.9e-18 97.1 66 69.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 6.1e-16 89.4 66 66.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.3e-15 87.4 76 55.3
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 4.2e-09 66.6 58 60.3
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.0e-07 62.0 59 57.6
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 3.0e-07 60.5 34 79.4


User provided reference genes

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