Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 3.2e-124 448.4 218 100.0
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 7.3e-92 340.9 250 71.2
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 2.7e-86 322.4 250 66.8
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.1e-84 317.0 250 66.4
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.5e-84 316.6 239 69.0
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 3.6e-83 312.0 249 63.9
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.6e-81 305.8 250 62.4
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.6e-81 305.8 250 62.4
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 1.7e-80 303.1 249 62.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.9e-80 302.4 250 61.6
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 8.4e-80 300.8 249 63.1
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.1e-79 300.4 250 62.8
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.9e-79 299.7 250 61.2
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 3.2e-79 298.9 253 61.7
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.6e-78 296.6 249 62.2
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.6e-78 296.6 249 60.6
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 1.6e-78 296.6 250 61.2
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 2.1e-78 296.2 247 61.5
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.1e-78 296.2 249 60.6
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.1e-78 296.2 249 60.6
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 3.5e-78 295.4 249 59.8
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.0e-78 294.7 249 61.4
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 6.0e-78 294.7 249 59.4
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.0e-77 293.9 249 60.6
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 3.9e-77 292.0 250 59.2
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.1e-77 291.6 250 59.6
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 1.5e-76 290.0 255 58.8
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.5e-76 290.0 250 59.6
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 2.5e-76 289.3 251 56.2
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 4.3e-76 288.5 249 59.4
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 4.3e-76 288.5 250 59.2
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 4.3e-76 288.5 248 60.5
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 5.6e-76 288.1 250 58.0
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 9.6e-76 287.3 250 59.6
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 9.6e-76 287.3 250 58.4
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 2.8e-75 285.8 250 59.6
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 4.7e-75 285.0 249 59.8
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 6.2e-75 284.6 250 60.4
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 6.2e-75 284.6 250 58.8
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.4e-74 283.5 250 59.2
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.4e-74 283.5 250 59.6
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.4e-74 283.5 250 56.8
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.4e-74 282.7 246 61.0
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 3.1e-74 282.3 255 56.9
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 5.2e-74 281.6 251 59.4
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.5e-73 280.0 250 58.8
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.5e-73 280.0 250 58.4
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 2.0e-73 279.6 250 57.6
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.0e-73 279.6 254 57.9
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.6e-73 279.3 255 56.1
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.6e-73 279.3 250 58.0
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 9.9e-73 277.3 250 56.8
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 9.9e-73 277.3 250 58.8
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 2.9e-72 275.8 250 56.8
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 3.8e-72 275.4 251 56.6
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.8e-72 275.4 250 58.8
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 4.9e-72 275.0 250 57.2
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 6.4e-72 274.6 250 55.2
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 8.4e-72 274.2 250 57.6
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-71 273.9 250 56.4
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.9e-71 273.1 250 58.0
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.4e-71 272.7 250 54.4
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 2.4e-71 272.7 251 53.4
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 5.4e-71 271.6 250 55.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 9.3e-71 270.8 249 55.0
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 3.5e-70 268.9 250 56.0
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.0e-69 267.3 250 53.6
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.3e-69 266.9 250 53.2
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.7e-69 266.5 255 53.3
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 3.0e-69 265.8 250 54.0
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 3.0e-69 265.8 255 54.9
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 3.0e-69 265.8 255 54.9
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 3.0e-69 265.8 250 56.0
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 3.9e-69 265.4 250 56.0
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 6.6e-69 264.6 249 54.2
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.1e-68 263.8 250 54.0
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.5e-68 263.5 251 52.6
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 1.5e-68 263.5 252 54.4
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 1.5e-68 263.5 250 54.0
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 1.9e-68 263.1 250 54.8
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 2.5e-68 262.7 250 53.2
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 3.3e-68 262.3 250 52.8
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 4.3e-68 261.9 250 54.8
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 5.6e-68 261.5 253 53.8
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 5.6e-68 261.5 251 54.6
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 5.6e-68 261.5 249 53.4
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 7.3e-68 261.2 250 54.0
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 9.6e-68 260.8 248 52.0
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 9.6e-68 260.8 250 55.6
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.6e-67 260.0 250 52.8
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.1e-67 259.6 250 55.2
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 3.6e-67 258.8 250 53.6
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 6.2e-67 258.1 252 54.4
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 6.2e-67 258.1 250 54.0
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 8.1e-67 257.7 250 53.2
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.4e-66 256.9 250 54.4
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 5.3e-66 255.0 249 53.8
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.5e-65 253.4 252 52.4
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 3.4e-65 252.3 252 53.6
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.9e-64 249.2 257 51.8
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 8.4e-64 247.7 249 51.0
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.1e-63 247.3 242 50.8
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 1.4e-63 246.9 250 53.6
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 3.2e-63 245.7 242 50.4
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.1e-62 243.0 250 54.0
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 2.7e-62 242.7 255 51.0
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 4.6e-62 241.9 228 58.3
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.0e-61 240.7 251 49.4
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.1e-60 237.3 198 61.6
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 3.3e-60 235.7 251 49.4
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 5.6e-60 235.0 250 49.6
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 7.4e-60 234.6 250 48.8
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 9.6e-60 234.2 250 49.2
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 4.8e-59 231.9 253 47.8
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 9.0e-58 227.6 216 57.4
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 5.8e-57 224.9 191 59.2
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 7.6e-57 224.6 253 48.2
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.7e-56 223.4 229 51.1
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 6.4e-56 221.5 218 55.5
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.7e-54 216.1 223 49.3
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-53 213.8 240 49.2
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.6e-43 180.3 121 68.6
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.8e-43 179.5 195 48.2
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.6e-41 171.4 209 48.3
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 5.0e-40 168.7 252 41.7
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 8.5e-40 167.9 252 39.7
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 2.7e-38 162.9 258 39.1
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.0e-37 161.0 252 40.1
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 2.5e-36 156.4 252 39.7
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 6.9e-34 148.3 105 63.8
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.2e-30 137.5 121 60.3
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 4.6e-30 135.6 79 77.2
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 6.1e-30 135.2 121 56.2
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 4.1e-26 122.5 121 48.8
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 2.5e-23 113.2 164 45.1
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.2e-22 110.9 92 57.6
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.3e-19 100.9 326 27.6
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 2.8e-19 99.8 103 53.4
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 7.7e-17 91.7 121 44.6
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.3e-16 90.9 122 44.3
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 3.2e-15 86.3 68 60.3
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 4.2e-15 85.9 132 37.1
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 7.2e-15 85.1 74 56.8
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 7.2e-15 85.1 74 56.8
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 3.6e-14 82.8 125 38.4
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 6.1e-14 82.0 74 55.4
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.6e-09 67.4 49 63.3
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.1e-07 61.2 68 47.1
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 6.1e-06 55.5 71 43.7


User provided reference genes

Program Settings