Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 7.0e-110 400.6 196 100.0
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 7.3e-51 204.5 144 73.6
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 9.6e-51 204.1 144 72.2
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 1.3e-42 177.2 144 61.1
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 2.8e-42 176.0 136 65.4
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 3.6e-42 175.6 183 51.4
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 1.4e-41 173.7 139 63.3
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.8e-41 173.3 151 62.3
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 2.4e-41 172.9 160 58.8
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.1e-41 172.6 134 64.2
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 4.0e-41 172.2 137 64.2
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 4.0e-41 172.2 134 65.7
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.3e-41 171.8 134 63.4
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.3e-41 171.8 134 63.4
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.3e-41 171.8 134 63.4
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.9e-41 171.4 134 63.4
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.0e-41 171.0 134 63.4
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.2e-40 170.6 146 61.0
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.5e-40 170.2 134 62.7
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-40 169.9 134 62.7
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 2.6e-40 169.5 147 62.6
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.4e-40 169.1 133 66.9
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 4.5e-40 168.7 133 63.2
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.5e-40 168.7 134 62.7
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.5e-40 168.7 131 64.1
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 4.5e-40 168.7 136 61.8
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 9.9e-40 167.5 157 54.1
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.3e-39 167.2 151 57.6
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.7e-39 166.8 144 56.9
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 2.2e-39 166.4 149 58.4
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 3.8e-39 165.6 145 61.4
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 4.9e-39 165.2 123 67.5
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 6.4e-39 164.9 157 52.9
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.4e-39 164.9 141 60.3
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.4e-39 164.9 134 60.4
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.4e-39 164.5 134 61.2
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.4e-39 164.5 134 60.4
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 1.1e-38 164.1 121 66.9
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 1.9e-38 163.3 147 55.8
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 1.9e-38 163.3 147 57.8
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.2e-38 162.2 134 59.7
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 4.2e-38 162.2 142 56.3
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 7.1e-38 161.4 131 61.8
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 9.3e-38 161.0 138 56.5
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.2e-37 160.6 141 62.4
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.6e-37 160.2 139 57.6
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 6.0e-37 158.3 142 57.0
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 6.0e-37 158.3 139 61.2
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 6.0e-37 158.3 144 57.6
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 2.3e-36 156.4 144 55.6
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 3.9e-36 155.6 124 62.9
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 8.7e-36 154.5 132 58.3
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.5e-35 153.7 147 58.5
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 1.5e-35 153.7 147 55.1
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 1.5e-35 153.7 138 58.7
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.9e-35 153.3 145 57.2
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 3.3e-35 152.5 177 47.5
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 3.3e-35 152.5 140 56.4
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 4.3e-35 152.1 149 55.7
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 9.6e-35 151.0 138 57.2
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.8e-34 149.4 138 55.8
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 8.1e-34 147.9 128 57.8
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 8.1e-34 147.9 139 56.1
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 1.1e-33 147.5 138 57.2
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.4e-33 147.1 144 56.2
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.8e-33 146.7 143 55.9
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.8e-33 146.7 111 64.9
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 5.3e-33 145.2 120 60.0
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 6.9e-33 144.8 138 55.8
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 7.6e-32 141.4 141 52.5
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.2e-31 139.8 140 50.7
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 5.5e-30 135.2 78 84.6
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 7.1e-30 134.8 138 54.3
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 1.1e-27 127.5 230 35.7
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.1e-27 127.5 103 62.1
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.1e-27 127.5 143 46.9
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.5e-27 127.1 131 54.2
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 2.5e-27 126.3 145 49.7
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 2.5e-27 126.3 145 49.7
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 4.3e-27 125.6 133 50.4
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 4.3e-27 125.6 104 58.7
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-27 125.2 101 61.4
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.2e-26 121.7 101 60.4
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 3.1e-25 119.4 128 50.0
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 5.3e-25 118.6 133 50.4
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 1.2e-24 117.5 147 49.0
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 5.8e-24 115.2 140 50.7
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 2.9e-23 112.8 137 49.6
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 6.5e-23 111.7 150 46.7
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 3.2e-22 109.4 136 47.8
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 3.2e-22 109.4 133 46.6
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 4.2e-22 109.0 104 55.8
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 1.2e-21 107.5 139 46.8
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 2.1e-21 106.7 132 47.0
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 4.6e-21 105.5 136 44.9
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 1.0e-20 104.4 130 46.9
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.3e-20 104.0 122 46.7
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 6.7e-20 101.7 124 49.2
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 6.7e-20 101.7 126 46.8
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.9e-19 100.1 139 43.2
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 1.9e-19 100.1 72 65.3
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 3.3e-19 99.4 131 45.0
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.2e-18 96.7 119 47.9
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 2.2e-18 96.7 137 43.8
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 2.8e-18 96.3 131 44.3
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 2.8e-18 96.3 124 46.0
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 1.4e-17 94.0 123 48.8
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 4.1e-17 92.4 121 43.8
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 5.3e-17 92.0 121 48.8
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 9.0e-17 91.3 121 47.9
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.5e-16 90.5 122 46.7
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 2.0e-16 90.1 132 43.2
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 4.5e-16 89.0 96 51.0
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 5.9e-16 88.6 114 43.0
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 1.0e-15 87.8 57 75.4
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.7e-15 87.0 120 45.8
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.7e-15 87.0 122 45.1
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 8.5e-15 84.7 121 44.6
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 3.2e-14 82.8 67 59.7
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.6e-13 80.5 73 56.2
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 3.6e-13 79.3 136 39.0
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 1.4e-12 77.4 100 44.0
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 2.0e-11 73.6 124 40.3
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 2.5e-11 73.2 97 46.4
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 1.3e-10 70.9 70 52.9
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.3e-10 70.9 58 53.4
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.3e-10 70.9 62 53.2
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 8.2e-10 68.2 79 45.6
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 8.2e-10 68.2 58 53.4
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 8.2e-10 68.2 54 59.3
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 1.1e-09 67.8 49 67.3
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.4e-09 67.4 49 59.2
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.1e-09 66.2 72 51.4
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 6.9e-09 65.1 143 32.2
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.2e-08 64.3 127 35.4


User provided reference genes

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