Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 3.0e-213 745.0 387 100.0
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.4e-138 495.0 387 73.9
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.4e-133 480.3 388 71.1
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.4e-130 470.3 382 70.9
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 4.1e-130 468.8 382 70.9
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 2.7e-129 466.1 387 69.3
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 3.5e-129 465.7 387 67.4
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.3e-128 463.8 388 66.2
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 7.3e-127 458.0 384 68.0
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 7.3e-127 458.0 388 67.3
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 2.1e-126 456.4 387 65.6
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 2.1e-126 456.4 384 68.0
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 3.6e-126 455.7 384 67.4
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.6e-126 455.7 384 68.0
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 4.7e-126 455.3 384 64.8
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.7e-126 455.3 384 66.1
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 1.4e-125 453.8 387 65.9
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.0e-125 452.6 384 65.4
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.0e-125 452.2 362 67.1
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 5.2e-125 451.8 364 67.6
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 6.8e-125 451.4 387 67.2
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 8.9e-125 451.1 389 65.3
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.2e-124 450.7 384 64.8
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.2e-124 450.7 384 64.6
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.5e-124 450.3 381 69.0
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 2.6e-124 449.5 389 64.5
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.4e-124 448.7 385 66.2
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 5.8e-124 448.4 392 66.3
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 5.8e-124 448.4 384 64.1
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 5.8e-124 448.4 389 66.6
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 9.8e-124 447.6 364 67.3
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 9.8e-124 447.6 384 63.8
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.3e-123 447.2 384 65.4
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.3e-123 447.2 384 65.1
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.7e-123 446.8 360 66.9
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-123 446.8 360 66.9
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-123 446.8 360 66.9
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.7e-123 446.8 360 66.9
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.7e-123 446.8 360 66.9
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.7e-123 446.8 384 65.9
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.7e-123 446.8 384 65.6
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 2.9e-123 446.0 384 64.1
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.9e-123 446.0 390 64.6
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.9e-123 446.0 384 63.5
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 2.9e-123 446.0 361 66.2
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 6.4e-123 444.9 384 64.1
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.4e-122 443.7 363 68.0
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 1.9e-122 443.4 384 63.0
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.2e-122 442.6 360 66.1
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.2e-122 442.6 361 65.7
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 3.2e-122 442.6 384 66.1
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 3.2e-122 442.6 385 65.7
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.2e-122 442.6 386 65.3
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 5.4e-122 441.8 362 66.0
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 9.2e-122 441.0 384 64.8
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 1.2e-121 440.7 362 65.5
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.2e-121 440.7 384 63.0
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 1.2e-121 440.7 364 66.2
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.2e-121 440.7 384 63.8
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 1.2e-121 440.7 388 64.4
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 2.7e-121 439.5 363 67.5
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.7e-121 439.5 384 63.8
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 3.5e-121 439.1 362 65.7
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 4.6e-121 438.7 389 61.7
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 4.6e-121 438.7 364 65.7
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 6.0e-121 438.3 387 63.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 7.8e-121 438.0 385 65.5
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.3e-120 437.2 384 65.4
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.3e-120 437.2 384 63.3
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.3e-120 437.2 384 63.0
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.1e-119 434.1 364 65.4
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.1e-119 434.1 388 63.1
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-119 433.3 377 63.7
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.9e-119 433.3 366 65.6
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 4.3e-119 432.2 384 63.0
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 5.6e-119 431.8 389 61.7
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 7.3e-119 431.4 384 63.5
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 9.5e-119 431.0 364 64.8
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 9.5e-119 431.0 355 65.4
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 9.5e-119 431.0 363 64.7
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.8e-118 429.5 363 64.5
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 3.6e-118 429.1 364 65.9
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 6.2e-118 428.3 368 64.9
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 6.2e-118 428.3 363 65.3
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 2.3e-117 426.4 388 61.1
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.3e-117 426.4 389 61.4
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 8.9e-117 424.5 364 64.0
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 2.0e-116 423.3 347 66.3
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 2.6e-116 422.9 397 61.2
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 4.4e-116 422.2 387 62.5
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 7.5e-116 421.4 362 63.3
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 9.8e-116 421.0 386 64.5
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 2.2e-115 419.9 387 65.9
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.9e-115 419.5 362 64.4
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 2.9e-115 419.5 362 63.8
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.9e-114 416.8 391 60.9
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 9.2e-114 414.5 362 62.4
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.2e-113 414.1 364 62.6
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 1.6e-113 413.7 363 63.9
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 3.5e-113 412.5 388 59.8
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 4.6e-113 412.1 382 59.9
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 4.6e-113 412.1 364 62.4
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.8e-113 411.4 361 63.7
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 1.3e-112 410.6 360 63.6
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.9e-111 406.8 363 63.4
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.5e-111 406.4 364 61.8
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 5.6e-111 405.2 366 60.1
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.5e-111 404.4 363 62.5
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.1e-109 401.0 357 63.6
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 3.1e-109 399.4 361 62.3
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.2e-108 397.5 364 61.3
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 3.4e-108 396.0 362 61.6
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 5.8e-108 395.2 364 60.4
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 5.8e-108 395.2 363 61.4
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.7e-107 393.7 204 94.6
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 1.1e-106 391.0 361 59.8
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.9e-106 390.2 204 92.6
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.4e-106 388.7 360 60.8
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 2.7e-105 386.3 369 58.8
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.5e-103 380.6 362 59.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.6e-103 378.6 334 62.9
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 5.6e-103 378.6 363 57.9
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.6e-102 377.1 204 90.7
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.6e-102 377.1 204 90.7
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 4.7e-102 375.6 200 92.0
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 6.2e-102 375.2 376 57.4
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.8e-101 373.6 334 61.1
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 2.3e-96 356.7 362 58.0
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.3e-96 356.7 201 89.1
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 8.7e-96 354.8 325 60.6
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.2e-94 350.9 360 52.8
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.2e-94 350.9 333 59.8
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 4.0e-93 345.9 182 94.5
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.3e-91 340.9 182 91.8
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 6.0e-89 332.0 335 54.9
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.3e-88 330.1 332 54.5
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.6e-86 323.9 201 82.6
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 3.6e-86 322.8 334 52.7
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.5e-84 317.4 301 59.1
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 3.4e-84 316.2 174 90.2
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.9e-83 313.2 337 51.0
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.4e-82 310.8 395 49.6
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.1e-73 280.4 204 76.5
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 6.0e-73 278.9 152 90.1
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 7.9e-65 251.9 146 84.9
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 4.1e-61 239.6 209 64.1
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 7.7e-60 235.3 265 52.1
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.7e-49 199.5 276 45.3
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.8e-48 197.6 119 77.3
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 8.2e-46 188.7 158 64.6
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 3.1e-45 186.8 136 72.8
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 1.5e-44 184.5 177 59.3
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 5.5e-42 176.0 105 79.0
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 2.6e-36 157.1 96 77.1
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.5e-31 141.4 318 34.6
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 7.5e-31 139.0 72 90.3
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.5e-26 124.8 171 43.3
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 5.5e-26 122.9 66 92.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 5.5e-26 122.9 66 92.4
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.0e-23 114.4 143 49.0
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.8e-21 107.8 84 67.9
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.5e-18 97.4 62 80.6
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.5e-18 97.4 62 80.6
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 9.5e-18 95.5 253 30.4
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 6.1e-17 92.8 187 37.4
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 8.9e-16 89.0 85 56.5
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 4.9e-14 83.2 170 37.6
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 1.1e-13 82.0 84 65.5
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 7.0e-13 79.3 92 51.1
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 7.8e-12 75.9 63 60.3
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 7.8e-12 75.9 72 55.6
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.3e-11 75.1 71 59.2
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-11 74.7 103 44.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.9e-11 73.9 110 41.8
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 6.1e-09 66.2 43 79.1
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 1.8e-08 64.7 31 93.5
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.0e-07 61.2 34 82.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 2.6e-07 60.8 42 73.8
Solyc04g079010.1 Solanum lycopersicum HOM05D003815 ORTHO05D004580 4.9e-06 56.6 31 74.2
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 6.4e-06 56.2 50 54.0
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 8.3e-06 55.8 38 71.1


User provided reference genes

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