Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 5.5e-148 527.7 287 100.0
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 2.2e-136 489.2 287 94.4
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.0e-109 400.6 287 78.0
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.5e-97 360.1 288 73.3
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 3.7e-83 312.4 289 62.3
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.9e-79 300.1 287 62.7
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 4.6e-78 295.4 272 64.3
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.0e-77 294.3 286 62.6
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 1.3e-77 293.9 290 61.7
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 1.8e-77 293.5 288 60.4
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 5.6e-76 288.5 233 68.7
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 9.6e-76 287.7 298 58.7
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 4.8e-75 285.4 295 61.0
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 1.1e-74 284.3 290 60.3
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 4.0e-74 282.3 298 61.1
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 5.3e-74 282.0 242 64.0
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.5e-73 280.4 279 59.9
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.3e-72 277.3 295 59.3
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 6.5e-72 275.0 288 60.1
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 6.5e-72 275.0 294 60.5
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 2.5e-71 273.1 292 61.0
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 9.3e-71 271.2 297 58.6
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.6e-70 270.4 276 59.4
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 2.7e-70 269.6 250 62.8
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 7.9e-70 268.1 292 56.2
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.0e-69 267.7 276 58.3
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 1.3e-69 267.3 252 66.7
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 1.3e-69 267.3 296 57.4
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 8.7e-69 264.6 275 58.2
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.1e-68 264.2 300 57.3
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 1.9e-68 263.5 244 66.8
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 3.3e-68 262.7 289 59.2
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 7.4e-68 261.5 243 60.9
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 1.6e-67 260.4 290 58.3
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 2.2e-67 260.0 297 57.2
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 4.8e-67 258.8 240 61.2
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 6.3e-67 258.5 243 62.1
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 4.1e-66 255.8 207 71.5
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 9.0e-66 254.6 298 55.0
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 9.0e-66 254.6 304 53.0
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.2e-65 254.2 241 61.0
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.6e-65 253.1 298 54.7
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 5.9e-65 251.9 270 57.8
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 5.9e-65 251.9 313 50.5
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 7.7e-65 251.5 265 58.9
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.7e-64 250.4 262 56.5
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 2.2e-64 250.0 267 57.7
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.8e-64 249.2 298 55.0
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 6.5e-64 248.4 286 57.7
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.1e-63 247.7 276 54.7
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.1e-63 247.7 295 55.6
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.4e-63 247.3 300 54.0
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.4e-63 247.3 282 55.3
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 1.9e-63 246.9 248 57.7
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 2.5e-63 246.5 265 57.4
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 4.2e-63 245.7 259 58.3
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 7.2e-63 245.0 248 57.7
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 9.4e-63 244.6 277 56.3
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 9.4e-63 244.6 288 56.2
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.2e-62 244.2 287 56.1
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 1.2e-62 244.2 193 66.8
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.6e-62 243.8 234 60.7
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 2.7e-62 243.0 205 67.3
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 6.1e-62 241.9 219 62.1
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 1.8e-61 240.4 275 53.8
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 3.0e-61 239.6 275 57.5
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 3.0e-61 239.6 245 59.6
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.9e-61 239.2 296 53.4
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 2.0e-60 236.9 206 63.1
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.7e-59 233.8 285 53.0
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.7e-59 233.8 285 53.0
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 2.2e-59 233.4 261 54.8
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 4.8e-59 232.3 236 58.9
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 1.8e-58 230.3 240 57.1
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 2.4e-58 229.9 243 56.4
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 3.1e-58 229.6 261 54.0
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 3.1e-58 229.6 261 54.0
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 3.1e-58 229.6 261 54.0
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 2.6e-57 226.5 282 53.9
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 2.6e-57 226.5 232 57.8
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 3.4e-57 226.1 270 57.0
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 5.9e-57 225.3 228 61.8
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 1.7e-56 223.8 226 58.0
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 1.7e-56 223.8 234 58.1
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.8e-56 222.6 289 51.9
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 3.2e-55 219.5 264 53.0
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.5e-55 218.8 289 51.9
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.2e-54 217.6 286 51.0
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.2e-54 217.6 286 51.0
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.7e-54 216.5 282 51.4
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 3.6e-54 216.1 290 50.3
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 3.9e-53 212.6 294 49.3
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 1.5e-52 210.7 291 49.5
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 4.4e-52 209.1 209 61.2
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 2.2e-51 206.8 207 60.4
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.1e-50 204.5 273 52.0
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.6e-46 190.7 191 60.7
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 2.7e-46 189.9 156 65.4
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 3.6e-46 189.5 285 43.9
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 8.0e-46 188.3 242 51.7
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 2.0e-44 183.7 266 46.2
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 1.6e-41 174.1 145 71.0
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 7.7e-41 171.8 268 45.9
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 1.3e-40 171.0 275 42.2
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 1.9e-39 167.2 267 44.9
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 8.0e-38 161.8 294 42.2
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 5.2e-37 159.1 286 43.0
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 1.7e-35 154.1 292 41.8
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 1.4e-34 151.0 181 52.5
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 9.1e-34 148.3 136 62.5
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 1.1e-31 141.4 184 47.8
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 1.5e-31 141.0 225 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 4.7e-30 136.0 239 40.6
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 4.4e-28 129.4 168 52.4
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 4.4e-28 129.4 168 52.4
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 2.2e-27 127.1 125 57.6
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 6.3e-27 125.6 134 56.0
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 1.2e-25 121.3 131 54.2
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.4e-21 107.8 204 37.7
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 4.0e-21 106.3 152 47.4
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 2.6e-20 103.6 232 35.8
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 2.6e-20 103.6 189 40.2
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 1.7e-19 100.9 235 37.9
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 8.3e-19 98.6 196 43.4
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.1e-18 98.2 74 71.6
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 2.4e-18 97.1 132 49.2
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 9.5e-15 85.1 71 64.8
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 6.8e-13 79.0 155 37.4
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 2.0e-12 77.4 82 57.3
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 2.6e-12 77.0 62 64.5
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 2.4e-10 70.5 47 70.2
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 2.0e-09 67.4 70 58.6
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 3.5e-09 66.6 172 27.9
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.2e-06 58.2 42 69.0
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 2.1e-06 57.4 59 49.2
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 6.2e-06 55.8 35 80.0


User provided reference genes

Program Settings