Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 0.0e+00 1159.1 566 100.0
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 4.9e-265 917.5 534 86.7
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 1.1e-240 836.6 534 78.5
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 2.6e-234 815.5 534 76.8
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 5.8e-234 814.3 536 76.1
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.9e-232 809.3 534 76.0
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 2.5e-232 808.9 534 75.8
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 3.2e-232 808.5 534 75.8
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 4.6e-231 804.7 536 75.4
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 1.3e-230 803.1 530 75.7
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 3.9e-230 801.6 534 75.5
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.9e-229 799.3 534 75.5
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 1.9e-229 799.3 534 74.7
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 1.9e-229 799.3 534 74.7
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 3.3e-229 798.5 534 74.5
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 4.3e-229 798.1 534 74.5
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 7.4e-229 797.3 534 74.3
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 7.4e-229 797.3 534 74.7
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 4.8e-228 794.7 534 75.1
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 6.2e-228 794.3 533 75.4
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 6.2e-228 794.3 534 74.9
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 6.2e-228 794.3 534 73.8
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 8.2e-228 793.9 534 74.3
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 1.4e-227 793.1 534 74.3
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.4e-227 792.3 534 74.7
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 9.0e-227 790.4 534 74.3
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 2.2e-225 785.8 534 74.0
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 2.9e-225 785.4 535 74.0
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 3.8e-225 785.0 534 74.2
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 8.4e-225 783.9 536 74.4
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 2.5e-224 782.3 533 73.7
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 3.2e-224 781.9 533 74.7
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 5.5e-224 781.2 533 73.2
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 7.2e-224 780.8 532 74.1
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 9.3e-224 780.4 535 73.5
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 1.0e-222 776.9 534 73.2
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 1.3e-222 776.5 533 73.4
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 3.0e-222 775.4 533 73.0
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 5.1e-222 774.6 533 71.5
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.3e-221 771.9 534 73.4
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 5.7e-221 771.2 534 71.0
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 5.7e-221 771.2 536 72.4
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 8.2e-220 767.3 533 73.2
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 5.3e-219 764.6 533 71.7
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 6.9e-219 764.2 534 71.0
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 6.9e-219 764.2 534 71.0
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 2.0e-218 762.7 533 72.8
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 5.9e-218 761.1 534 72.7
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 5.9e-218 761.1 534 72.7
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 7.7e-218 760.8 532 70.7
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 1.0e-217 760.4 534 72.8
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.0e-217 760.4 572 69.4
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 1.0e-217 760.4 534 72.5
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 1.3e-217 760.0 533 71.7
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 1.7e-217 759.6 533 72.6
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.9e-217 758.8 534 70.2
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 6.5e-217 757.7 533 72.4
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 6.5e-217 757.7 534 72.3
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 1.1e-216 756.9 533 72.4
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 1.4e-216 756.5 533 71.1
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 2.5e-216 755.7 534 72.3
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 2.5e-216 755.7 534 72.3
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 7.2e-216 754.2 533 72.0
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 7.2e-216 754.2 566 68.9
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.6e-215 753.1 534 70.4
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 3.6e-215 751.9 533 72.0
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 1.0e-214 750.4 533 72.2
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.4e-214 750.0 534 70.2
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 5.7e-213 744.6 594 65.3
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 7.4e-213 744.2 594 65.2
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 7.4e-213 744.2 534 69.3
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 1.1e-211 740.3 597 66.3
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 3.1e-211 738.8 535 70.7
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 1.0e-209 733.8 599 65.1
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 2.2e-209 732.6 549 68.9
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 1.1e-208 730.3 534 71.0
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.2e-207 726.9 533 69.2
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 2.7e-207 725.7 533 67.5
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 3.6e-207 725.3 534 69.7
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 7.9e-207 724.2 526 70.0
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 5.1e-206 721.5 548 68.8
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 2.6e-205 719.2 536 69.4
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.5e-197 693.3 532 65.6
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 9.1e-195 684.1 539 66.4
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 6.1e-191 671.4 590 61.7
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 1.8e-190 669.8 533 64.0
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 6.8e-190 667.9 532 66.0
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 7.7e-186 654.4 452 71.9
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.2e-181 640.6 467 68.7
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 1.2e-181 640.6 443 73.1
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 1.7e-180 636.7 444 73.4
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 1.8e-179 633.3 515 63.9
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 9.8e-173 610.9 533 61.5
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 6.6e-169 598.2 495 64.8
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 9.2e-163 577.8 575 55.0
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 1.7e-161 573.5 533 58.9
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 3.4e-157 559.3 534 58.2
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 2.1e-154 550.1 534 51.5
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 6.8e-150 535.0 537 52.0
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 5.8e-149 531.9 442 63.3
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.0e-145 521.2 293 84.3
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 2.6e-141 506.5 456 60.5
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 3.6e-135 486.1 531 47.6
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.1e-134 484.6 353 63.5
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 7.9e-130 468.4 301 73.4
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 6.2e-119 432.2 497 45.9
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.4e-118 431.0 534 45.5
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 5.5e-115 419.1 335 66.0
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 1.2e-106 391.3 447 53.5
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 6.3e-103 379.0 220 81.4
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 1.0e-97 361.7 272 68.0
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 2.0e-96 357.5 199 84.4
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 4.4e-96 356.3 392 53.8
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 1.1e-91 341.7 602 34.9
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 1.7e-79 301.2 403 41.9
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.0e-73 280.4 158 84.8
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.6e-64 250.8 183 72.1
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 1.2e-58 231.9 138 82.6
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 4.7e-58 229.9 182 64.3
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 5.7e-56 223.0 259 51.4
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.4e-54 218.4 537 29.2
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 7.8e-53 212.6 452 31.2
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.3e-52 211.8 187 63.1
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.0e-52 210.7 187 62.6
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.6e-51 206.5 132 75.8
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 5.6e-51 206.5 133 72.9
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 2.3e-44 184.5 139 66.9
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 3.1e-41 174.1 252 37.3
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 2.9e-39 167.5 209 42.6
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 2.7e-37 161.0 230 39.6
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 3.3e-35 154.1 85 90.6
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 2.8e-34 151.0 91 79.1
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.9e-31 141.0 132 58.3
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 8.1e-26 122.9 67 86.6
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 1.1e-25 122.5 64 87.5
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 5.1e-20 103.6 64 73.4
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.9e-11 75.1 38 84.2
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 8.1e-10 69.7 73 52.1
ClCG07G010240 Citrullus lanatus HOM05D005139 ORTHO05D006125 4.2e-06 57.4 70 52.9


User provided reference genes

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