Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09306 Corylus avellana HOM05D001101 ORTHO05D000893 5.7e-147 524.2 266 100.0
Cfa019545 Carpinus fangiana HOM05D001101 ORTHO05D000893 2.0e-128 462.6 248 95.2
QL08p025698 Quercus lobata HOM05D001101 ORTHO05D000893 5.7e-99 364.8 248 76.2
CiPaw.12G112600 Carya illinoinensis HOM05D001101 ORTHO05D000893 6.4e-98 361.3 249 75.9
Thecc.07G126600 Theobroma cacao HOM05D001101 ORTHO05D000893 2.5e-86 322.8 250 69.2
Prupe.4G160200 Prunus persica HOM05D001101 ORTHO05D000893 7.3e-86 321.2 248 68.5
CiPaw.11G158700 Carya illinoinensis HOM05D001101 ORTHO05D000893 1.6e-85 320.1 249 70.3
Duzib213G1057 Durio zibethinus HOM05D001101 ORTHO05D000893 2.6e-83 312.8 249 67.1
Manes.03G099900 Manihot esculenta HOM05D001101 ORTHO05D000893 2.6e-83 312.8 249 65.5
TWI38G2134 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 3.4e-83 312.4 250 67.2
Dinv18380 Davidia involucrata HOM05D001101 ORTHO05D000893 4.4e-83 312.0 252 67.5
Gohir.A04G043400 Gossypium hirsutum HOM05D001101 ORTHO05D000893 5.8e-83 311.6 249 65.5
Gohir.D05G340200 Gossypium hirsutum HOM05D001101 ORTHO05D000893 2.2e-82 309.7 249 65.1
Gorai.009G366600 Gossypium raimondii HOM05D001101 ORTHO05D000893 2.2e-82 309.7 249 65.1
FAN16G1275 Fragaria x ananassa HOM05D001101 ORTHO05D000893 3.7e-82 308.9 250 64.4
Manes.15G096600 Manihot esculenta HOM05D001101 ORTHO05D000893 1.1e-81 307.4 234 67.1
COL.COLO4_17509 Corchorus olitorius HOM05D001101 ORTHO05D000893 1.4e-81 307.0 249 65.5
Sabra11G0095800 Salix brachista HOM05D001101 ORTHO05D000893 1.9e-81 306.6 249 65.9
GSVIVG01014170001 Vitis vinifera HOM05D001101 ORTHO05D000893 1.9e-81 306.6 252 65.5
Ciclev10019902m.g Citrus clementina HOM05D001101 ORTHO05D000893 1.6e-80 303.5 255 64.7
FvH4_3g18140 Fragaria vesca HOM05D001101 ORTHO05D000893 2.1e-80 303.1 250 64.0
RcHm_v2.0_Chr5g0030571 Rosa chinensis HOM05D001101 ORTHO05D000893 2.7e-80 302.8 250 66.4
FAN11G2831 Fragaria x ananassa HOM05D001101 ORTHO05D000893 4.6e-80 302.0 250 63.6
Sabra16G0254800 Salix brachista HOM05D001101 ORTHO05D000893 1.7e-79 300.1 269 61.7
FAN21G1665 Fragaria x ananassa HOM05D001101 ORTHO05D000893 3.0e-79 299.3 250 63.2
FAN25G0535 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.1e-78 297.4 250 62.4
Eucgr.F03283 Eucalyptus grandis HOM05D001101 ORTHO05D000893 1.5e-78 297.0 251 64.9
TWI39G0632 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 9.5e-78 294.3 250 63.2
ClCG07G010190 Citrullus lanatus HOM05D001101 ORTHO05D000893 1.4e-76 290.4 255 62.0
Potri.011G107800 Populus trichocarpa HOM05D001101 ORTHO05D000893 1.8e-76 290.0 249 64.3
Lj8A147G49 Lonicera japonica HOM05D001101 ORTHO05D000893 2.4e-76 289.7 251 62.2
Potri.001G387500 Populus trichocarpa HOM05D001101 ORTHO05D000893 4.0e-76 288.9 341 50.7
MELO3C016123.2 Cucumis melo HOM05D001101 ORTHO05D000893 5.2e-76 288.5 250 61.6
TAR626G0991 Trochodendron aralioides HOM05D001101 ORTHO05D000893 3.4e-75 285.8 253 62.1
Actinidia18809 Actinidia chinensis HOM05D001101 ORTHO05D000893 2.9e-74 282.7 252 61.9
Rhsim06G0210100 Rhododendron simsii HOM05D001101 ORTHO05D000893 2.9e-74 282.7 256 61.3
TAR627G0318 Trochodendron aralioides HOM05D001101 ORTHO05D000893 8.4e-74 281.2 254 61.0
Sed0014809 Sechium edule HOM05D001101 ORTHO05D000893 1.1e-73 280.8 250 59.6
Cpa.g.sc77.33 Carica papaya HOM05D001101 ORTHO05D000893 9.2e-73 277.7 251 61.4
CANSAT35G0774 Cannabis sativa HOM05D001101 ORTHO05D000893 3.9e-71 272.3 256 59.8
CSS0019453 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 8.6e-71 271.2 255 61.2
Nn3g21084 Nelumbo nucifera HOM05D001101 ORTHO05D000893 1.1e-70 270.8 253 56.9
Glyma.13G268500 Glycine max HOM05D001101 ORTHO05D000893 1.5e-70 270.4 266 55.3
vmacro11953 Vaccinium macrocarpon HOM05D001101 ORTHO05D000893 1.5e-70 270.4 266 57.9
CsaV3_4G008130 Cucumis sativus L. HOM05D001101 ORTHO05D000893 4.7e-69 265.4 251 59.4
VMungo1080G1788 Vigna mungo HOM05D001101 ORTHO05D000893 1.8e-68 263.5 279 53.0
arahy.Tifrunner.gnm1.ann1.I5PA0N Arachis hypogaea HOM05D001101 ORTHO05D000893 9.0e-68 261.2 263 54.4
Phvul.005G081000 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 2.6e-67 259.6 278 52.9
Nn6g34473 Nelumbo nucifera HOM05D001101 ORTHO05D000893 3.4e-67 259.2 252 57.1
arahy.Tifrunner.gnm1.ann1.R550IY Arachis hypogaea HOM05D001101 ORTHO05D000893 4.4e-67 258.8 263 54.0
Oeu031024.1 Olea europaea HOM05D001101 ORTHO05D000893 8.4e-66 254.6 253 56.5
Lj3g0007321 Lotus japonicus HOM05D001101 ORTHO05D000893 1.9e-65 253.4 252 58.3
Hma1.2p1_1650F.1_g295650 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 2.4e-65 253.1 254 57.1
Cc05_g10950 Coffea canephora HOM05D001101 ORTHO05D000893 1.6e-64 250.4 256 57.0
Lj3g0027156 Lotus japonicus HOM05D001101 ORTHO05D000893 3.5e-64 249.2 250 56.0
Ca_06629_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 1.1e-62 244.2 248 53.6
CSS0031512 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 1.9e-62 243.4 256 56.6
DCAR_013271 Daucus carota HOM05D001101 ORTHO05D000893 4.3e-62 242.3 253 52.6
Hma1.2p1_1872F.1_g306120 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 5.6e-62 241.9 256 55.1
SalBow1G6953 Salvia bowleyana HOM05D001101 ORTHO05D000893 1.6e-61 240.4 249 55.4
SalBow8G2079 Salvia bowleyana HOM05D001101 ORTHO05D000893 1.6e-61 240.4 249 55.4
MSTRG.6684 Avicennia marina HOM05D001101 ORTHO05D000893 1.4e-60 237.3 252 55.6
MD11G1265700 Malus domestica HOM05D001101 ORTHO05D000893 6.9e-60 235.0 178 66.9
Peaxi162Scf00111g01465 Petunia axillaris HOM05D001101 ORTHO05D000893 2.6e-59 233.0 249 55.4
Lalb_Chr03g0031231 Lupinus albus HOM05D001101 ORTHO05D000893 4.5e-59 232.3 250 54.4
THA.LOC104815575 Tarenaya hassleriana HOM05D001101 ORTHO05D000893 4.5e-59 232.3 259 52.5
MBI07_g00455_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 2.9e-58 229.6 257 51.4
Psat0s2485g0080 Pisum sativum HOM05D001101 ORTHO05D000893 2.9e-58 229.6 252 53.2
Nitab4.5_0016997g0010 Nicotiana tabacum HOM05D001101 ORTHO05D000893 1.1e-57 227.6 246 54.1
Lalb_Chr20g0109211 Lupinus albus HOM05D001101 ORTHO05D000893 2.4e-57 226.5 271 49.4
Nitab4.5_0000788g0050 Nicotiana tabacum HOM05D001101 ORTHO05D000893 4.2e-57 225.7 254 53.5
MBI06_g16699_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 9.3e-57 224.6 315 44.1
Medtr2g075860 Medicago truncatula HOM05D001101 ORTHO05D000893 1.6e-56 223.8 252 52.0
CAN.G375.25 Capsicum annuum HOM05D001101 ORTHO05D000893 2.3e-55 219.9 248 51.2
Aa31LG8G2070 Aethionema arabicum HOM05D001101 ORTHO05D000893 1.1e-54 217.6 258 50.8
Sopen07g030570 Solanum pennellii HOM05D001101 ORTHO05D000893 1.9e-54 216.9 253 54.2
Sc03g0010600 Simmondsia chinensis HOM05D001101 ORTHO05D000893 1.3e-53 214.2 254 50.0
Ah.06g185540 Amaranthus hybridus HOM05D001101 ORTHO05D000893 2.1e-53 213.4 251 49.8
PSO675G9353 Papaver somniferum HOM05D001101 ORTHO05D000893 2.1e-53 213.4 256 50.0
Solyc07g062300.3 Solanum lycopersicum HOM05D001101 ORTHO05D000893 2.1e-53 213.4 253 53.4
Aqoxy1G01983 Aquilegia oxysepala HOM05D001101 ORTHO05D000893 3.1e-52 209.5 258 48.4
MSTRG.14970 Avicennia marina HOM05D001101 ORTHO05D000893 5.3e-52 208.8 252 48.4
AUR62019596 Chenopodium quinoa HOM05D001101 ORTHO05D000893 6.9e-52 208.4 255 47.5
PGR031G1547 Punica granatum HOM05D001101 ORTHO05D000893 6.9e-52 208.4 282 51.1
PSO541G3246 Papaver somniferum HOM05D001101 ORTHO05D000893 1.2e-51 207.6 254 47.6
AUR62037563 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.5e-51 207.2 242 49.6
PGSC0003DMG400007097 Solanum tuberosum HOM05D001101 ORTHO05D000893 1.5e-51 207.2 253 52.6
EL10Ac9g23028 Beta vulgaris HOM05D001101 ORTHO05D000893 2.0e-51 206.8 269 46.1
Sp3g13070 Schrenkiella parvula HOM05D001101 ORTHO05D000893 9.9e-51 204.5 257 50.2
AL3G27180 Arabidopsis lyrata HOM05D001101 ORTHO05D000893 1.7e-50 203.8 258 50.4
Thhalv10020396m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 4.9e-50 202.2 257 49.8
A03p39010 Brassica napus HOM05D001101 ORTHO05D000893 1.1e-49 201.1 260 50.4
CARHR089800 Cardamine hirsuta HOM05D001101 ORTHO05D000893 9.3e-49 198.0 257 49.4
unitig_747.g21588 Utricularia gibba HOM05D001101 ORTHO05D000893 6.0e-48 195.3 252 46.8
Actinidia35207 Actinidia chinensis HOM05D001101 ORTHO05D000893 3.9e-47 192.6 242 46.7
CDE10G0134 Ceratophyllum demersum HOM05D001101 ORTHO05D000893 5.1e-47 192.2 255 47.5
BraA03t13051Z Brassica rapa HOM05D001101 ORTHO05D000893 1.9e-46 190.3 265 47.5
C03p47290 Brassica napus HOM05D001101 ORTHO05D000893 2.5e-46 189.9 260 48.5
Os02g0234200 Oryza sativa ssp. japonica HOM05D001101 ORTHO05D000893 3.3e-46 189.5 251 45.0
ECA236G1330 Erigeron canadensis HOM05D001101 ORTHO05D000893 2.1e-45 186.8 253 47.8
BolC3t16997H Brassica oleracea HOM05D001101 ORTHO05D000893 6.2e-45 185.3 268 47.0
AT3G14860 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 8.2e-45 184.9 258 48.1
BcaB04g20957 Brassica carinata HOM05D001101 ORTHO05D000893 2.4e-44 183.3 250 46.0
Carub.0003s1452 Capsella rubella HOM05D001101 ORTHO05D000893 3.1e-44 183.0 257 47.5
VMungo1127G0294 Vigna mungo HOM05D001101 ORTHO05D000893 5.5e-41 172.2 252 45.6
Medtr8g058280 Medicago truncatula HOM05D001101 ORTHO05D000893 4.6e-40 169.1 229 45.4
CsaV3_4G033000 Cucumis sativus L. HOM05D001101 ORTHO05D000893 3.0e-39 166.4 251 44.6
Glyma.12G231033 Glycine max HOM05D001101 ORTHO05D000893 1.1e-38 164.5 167 55.1
Zm00001eb239070 Zea mays HOM05D001101 ORTHO05D000893 9.7e-38 161.4 256 41.4
SGA_v2.0_scaffold73G24397 Striga asiatica HOM05D001101 ORTHO05D000893 6.3e-37 158.7 241 44.0
MELO3C025648.2 Cucumis melo HOM05D001101 ORTHO05D000893 1.4e-36 157.5 253 43.9
Sed0027959 Sechium edule HOM05D001101 ORTHO05D000893 3.1e-36 156.4 254 43.3
TPR.G16052 Trifolium pratense HOM05D001101 ORTHO05D000893 5.3e-36 155.6 252 42.9
Eucgr.L01895 Eucalyptus grandis HOM05D001101 ORTHO05D000893 6.9e-36 155.2 133 66.2
HanXRQChr04g0108531 Helianthus annuus HOM05D001101 ORTHO05D000893 9.0e-36 154.8 253 40.3
ClCG11G017370 Citrullus lanatus HOM05D001101 ORTHO05D000893 2.0e-35 153.7 253 43.5
Lsat_1_v5_gn_7_102241 Lactuca sativa HOM05D001101 ORTHO05D000893 1.1e-30 137.9 196 47.4
HPP92_020070 Vanilla planifolia HOM05D001101 ORTHO05D003060 2.2e-29 133.7 242 41.3
Hund10538 Selenicereus undatus HOM05D001101 ORTHO05D000893 8.2e-29 131.7 225 41.8
Migut.M00709 Erythranthe guttata HOM05D001101 ORTHO05D000893 4.7e-24 115.9 158 46.2
Phvul.011G166300 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 6.1e-24 115.5 147 44.9
ATR0012G063 Amborella trichopoda HOM05D001101 ORTHO05D000893 7.2e-17 92.0 253 34.8
BcaB04g18865 Brassica carinata HOM05D001101 ORTHO05D000893 3.3e-14 83.2 81 54.3
A01p38980 Brassica napus HOM05D001101 ORTHO05D000893 1.7e-10 70.9 160 38.8
BraA01t03944Z Brassica rapa HOM05D001101 ORTHO05D000893 1.7e-10 70.9 160 38.8
BcaC09g48454 Brassica carinata HOM05D001101 ORTHO05D000893 2.7e-08 63.5 172 36.0
SEGI_12056 Sequoiadendron giganteum HOM05D001101 ORTHO05D000893 1.8e-07 60.8 255 26.3


User provided reference genes

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