Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09257 Corylus avellana HOM05D006832 ORTHO05D008292 5.1e-120 434.9 302 100.0
Cfa019523 Carpinus fangiana HOM05D006832 ORTHO05D008292 5.7e-103 378.3 295 92.5
Haze_09255 Corylus avellana HOM05D006832 ORTHO05D008292 1.8e-56 223.8 221 75.1
CiPaw.11G157300 Carya illinoinensis HOM05D006832 ORTHO05D008292 3.9e-43 179.5 301 41.9
QL08p024452 Quercus lobata HOM05D006832 ORTHO05D008292 5.8e-39 165.6 287 43.6
Dinv15008 Davidia involucrata HOM05D006832 ORTHO05D008292 3.5e-28 129.8 319 36.1
Actinidia03616 Actinidia chinensis HOM05D006832 ORTHO05D008292 4.8e-25 119.4 325 34.2
GSVIVG01014166001 Vitis vinifera HOM05D006832 ORTHO05D008292 4.0e-24 116.3 313 36.4
Prupe.4G158600 Prunus persica HOM05D006832 ORTHO05D008292 3.8e-22 109.8 298 47.0
MD03G1246100 Malus domestica HOM05D006832 ORTHO05D008292 4.9e-22 109.4 301 33.9
RhsimUnG0013300 Rhododendron simsii HOM05D006832 ORTHO05D008292 2.7e-20 103.6 325 31.7
TWI38G0771 Tripterygium wilfordii HOM05D006832 ORTHO05D008292 2.7e-20 103.6 284 32.4
CANSAT56G2937 Cannabis sativa HOM05D006832 ORTHO05D008292 1.0e-19 101.7 305 29.8
Rhsim04G0036900 Rhododendron simsii HOM05D006832 ORTHO05D008292 1.8e-19 100.9 323 31.0
RcHm_v2.0_Chr5g0030051 Rosa chinensis HOM05D006832 ORTHO05D008292 1.8e-19 100.9 313 30.4
Gorai.013G174800 Gossypium raimondii HOM05D006832 ORTHO05D008292 3.9e-19 99.8 297 31.0
FAN21G3714 Fragaria x ananassa HOM05D006832 ORTHO05D008292 5.1e-19 99.4 303 31.7
Thecc.07G123300 Theobroma cacao HOM05D006832 ORTHO05D008292 5.1e-19 99.4 301 32.9
Potri.001G376900 Populus trichocarpa HOM05D006832 ORTHO05D008292 8.7e-19 98.6 303 30.4
Gohir.D13G154700 Gossypium hirsutum HOM05D006832 ORTHO05D008292 1.9e-18 97.4 301 30.6
FvH4_3g18000 Fragaria vesca HOM05D006832 ORTHO05D008292 9.6e-18 95.1 303 31.0
Rhsim04G0036600 Rhododendron simsii HOM05D006832 ORTHO05D008292 1.6e-17 94.4 320 30.0
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 2.8e-17 93.6 304 30.6
Gohir.A13G150400 Gossypium hirsutum HOM05D006832 ORTHO05D008292 4.8e-17 92.8 298 30.5
Sabra16G0248300 Salix brachista HOM05D006832 ORTHO05D008292 1.1e-16 91.7 293 29.4
Manes.15G097000 Manihot esculenta HOM05D006832 ORTHO05D008292 1.8e-16 90.9 288 31.2
Cc05_g10910 Coffea canephora HOM05D006832 ORTHO05D008292 2.4e-16 90.5 315 30.2
Lsat_1_v5_gn_9_100561 Lactuca sativa HOM05D006832 ORTHO05D008292 4.1e-16 89.7 289 28.7
CAN.G904.32 Capsicum annuum HOM05D006832 ORTHO05D008292 9.0e-16 88.6 260 30.8
PGSC0003DMG401021297 Solanum tuberosum HOM05D006832 ORTHO05D008292 1.5e-15 87.8 295 29.5
Oeu021042.1 Olea europaea HOM05D006832 ORTHO05D008292 4.5e-15 86.3 311 30.5
Sed0018751 Sechium edule HOM05D006832 ORTHO05D008292 7.6e-15 85.5 66 62.1
Solyc10g007440.3 Solanum lycopersicum HOM05D006832 ORTHO05D008292 2.2e-14 84.0 307 27.7
Eucgr.F03237 Eucalyptus grandis HOM05D006832 ORTHO05D008292 2.9e-14 83.6 290 30.3
MSTRG.14973 Avicennia marina HOM05D006832 ORTHO05D008292 3.8e-14 83.2 66 54.5
CsaV3_4G032920 Cucumis sativus L. HOM05D006832 ORTHO05D008292 3.8e-14 83.2 61 60.7
Peaxi162Scf00692g00121 Petunia axillaris HOM05D006832 ORTHO05D008292 5.0e-14 82.8 66 54.5
ClCG11G017270 Citrullus lanatus HOM05D006832 ORTHO05D008292 6.5e-14 82.4 61 63.9
Ciclev10020819m.g Citrus clementina HOM05D006832 ORTHO05D008292 6.5e-14 82.4 250 30.0
MELO3C025659.2 Cucumis melo HOM05D006832 ORTHO05D008292 6.5e-14 82.4 61 60.7
Sopen10g003390 Solanum pennellii HOM05D006832 ORTHO05D008292 8.4e-14 82.0 295 28.5
MSTRG.6686 Avicennia marina HOM05D006832 ORTHO05D008292 1.1e-13 81.6 303 30.4
Cpa.g.sc77.49 Carica papaya HOM05D006832 ORTHO05D008292 1.1e-13 81.6 63 55.6
Atru.chr2.2055_Atru.chr2.2057 Acer truncatum HOM05D006832 ORTHO05D008292 1.4e-13 81.3 289 28.4
Nitab4.5_0000383g0030 Nicotiana tabacum HOM05D006832 ORTHO05D008292 1.4e-13 81.3 324 39.5
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 1.9e-13 80.9 66 57.6
Aa31LG10G1740 Aethionema arabicum HOM05D006832 ORTHO05D008292 2.5e-13 80.5 64 59.4
Lalb_Chr25g0285711 Lupinus albus HOM05D006832 ORTHO05D008292 2.5e-13 80.5 67 52.2
arahy.Tifrunner.gnm1.ann1.LUID63 Arachis hypogaea HOM05D006832 ORTHO05D008292 7.2e-13 79.0 67 50.7
Hund10460 Selenicereus undatus HOM05D006832 ORTHO05D008292 9.3e-13 78.6 250 28.0
vmacro09407 Vaccinium macrocarpon HOM05D006832 ORTHO05D008292 1.6e-12 77.8 228 35.1
ECA240G3607 Erigeron canadensis HOM05D000109 ORTHO05D000210 2.1e-12 77.4 62 56.5
Gohir.D11G305300 Gossypium hirsutum HOM05D006832 ORTHO05D008292 2.1e-12 77.4 54 59.3
Gorai.007G327100 Gossypium raimondii HOM05D006832 ORTHO05D008292 2.1e-12 77.4 54 59.3
Sopen10g003400 Solanum pennellii HOM05D006832 ORTHO05D008292 2.7e-12 77.0 281 28.1
Gohir.A11G287600 Gossypium hirsutum HOM05D006832 ORTHO05D008292 4.6e-12 76.3 54 59.3
CSS0011221 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 7.9e-12 75.5 156 39.1
FAN25G0243 Fragaria x ananassa HOM05D006832 ORTHO05D008292 1.3e-11 74.7 304 28.3
PGR031G1976 Punica granatum HOM05D006832 ORTHO05D008292 1.8e-11 74.3 62 51.6
PGSC0003DMG403021297 Solanum tuberosum HOM05D006832 ORTHO05D008292 1.8e-11 74.3 240 28.3
arahy.Tifrunner.gnm1.ann1.U4EZEG Arachis hypogaea HOM05D006832 ORTHO05D008292 2.3e-11 73.9 67 46.3
SHI27646 Sapria himalayana HOM05D006832 ORTHO05D008292 3.0e-11 73.6 62 56.5
Solyc10g007460.4 Solanum lycopersicum HOM05D006832 ORTHO05D008292 3.9e-11 73.2 281 27.4
DCAR_013268 Daucus carota HOM05D006832 ORTHO05D008292 6.7e-11 72.4 293 29.0
Phvul.005G079500 Phaseolus vulgaris HOM05D006832 ORTHO05D008292 8.7e-11 72.0 67 47.8
THA.LOC104810427 Tarenaya hassleriana HOM05D006832 ORTHO05D008292 1.1e-10 71.6 63 54.0
BraA08t32210Z Brassica rapa HOM05D006832 ORTHO05D008292 1.5e-10 71.2 237 28.3
MD11G1267100 Malus domestica HOM05D006832 ORTHO05D008292 1.5e-10 71.2 65 52.3
TAR627G1032 Trochodendron aralioides HOM05D006832 ORTHO05D008292 1.5e-10 71.2 66 50.0
Carub.0001s4265 Capsella rubella HOM05D006832 ORTHO05D008292 1.9e-10 70.9 63 54.0
Sc16g0007700 Simmondsia chinensis HOM05D006832 ORTHO05D008292 1.9e-10 70.9 279 27.6
Migut.M00714 Erythranthe guttata HOM05D006832 ORTHO05D008292 3.3e-10 70.1 66 50.0
VMungo1080G1450 Vigna mungo HOM05D006832 ORTHO05D008292 3.3e-10 70.1 67 47.8
AL1G62020 Arabidopsis lyrata HOM05D006832 ORTHO05D008292 4.3e-10 69.7 63 52.4
AT1G53460 Arabidopsis thaliana HOM05D006832 ORTHO05D008292 4.3e-10 69.7 63 52.4
C03p91530 Brassica napus HOM05D006832 ORTHO05D008292 4.3e-10 69.7 63 52.4
BolC3t21470H Brassica oleracea HOM05D006832 ORTHO05D008292 4.3e-10 69.7 63 52.4
MBI06_g10736_MAGBIO Magnolia biondii HOM05D006832 ORTHO05D008292 4.3e-10 69.7 64 50.0
A08p01560 Brassica napus HOM05D006832 ORTHO05D008292 5.7e-10 69.3 243 27.2
CARHR043680 Cardamine hirsuta HOM05D006832 ORTHO05D008292 5.7e-10 69.3 63 52.4
Glyma.13G266700 Glycine max HOM05D006832 ORTHO05D008292 5.7e-10 69.3 62 50.0
SalBow1G6294 Salvia bowleyana HOM05D006832 ORTHO05D008292 1.6e-09 67.8 66 43.9
Sp1g40000 Schrenkiella parvula HOM05D006832 ORTHO05D008292 1.6e-09 67.8 63 49.2
SalBow8G1352 Salvia bowleyana HOM05D006832 ORTHO05D008292 2.2e-09 67.4 66 43.9
unitig_899.g15298 Utricularia gibba HOM05D006832 ORTHO05D008292 2.2e-09 67.4 68 47.1
CSS0014738 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 4.8e-09 66.2 156 37.8
Thhalv10011680m.g Eutrema salsugineum HOM05D006832 ORTHO05D008292 4.8e-09 66.2 244 28.3
BcaC01g01392 Brassica carinata HOM05D006832 ORTHO05D008292 6.3e-09 65.9 284 26.8
MBI06_g16692_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D008292 6.3e-09 65.9 70 44.3
Psat5g234400 Pisum sativum HOM05D006832 ORTHO05D008292 6.3e-09 65.9 67 47.8
TPR.G13159 Trifolium pratense HOM05D006832 ORTHO05D008292 1.1e-08 65.1 67 47.8
BcaB04g17079 Brassica carinata HOM05D006832 ORTHO05D008292 1.8e-08 64.3 234 29.1
ATR0127G025 Amborella trichopoda HOM05D006832 ORTHO05D008292 1.2e-07 61.6 60 46.7
PGSC0003DMG400026458 Solanum tuberosum HOM05D000017 ORTHO05D000308 1.5e-07 61.2 62 46.8
MBI06_g16691_MAGBIO Magnolia biondii HOM05D006832 ORTHO05D008292 2.0e-07 60.8 53 49.1
Aqoxy1G01968 Aquilegia oxysepala HOM05D006832 ORTHO05D008292 4.5e-07 59.7 62 43.5
Medtr2g075450 Medicago truncatula HOM05D006832 ORTHO05D008292 4.5e-07 59.7 67 43.3
Ca_03944_v3 Cicer arietinum L. HOM05D006832 ORTHO05D008292 5.9e-07 59.3 67 47.8
MBI07_g00466_MAGBIO Magnolia biondii HOM05D006832 ORTHO05D008292 1.7e-06 57.8 231 26.4
Sopen12g022760 Solanum pennellii HOM05D006832 ORTHO05D008292 2.2e-06 57.4 63 42.9
CSS0050002 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 2.9e-06 57.0 120 39.2
Nn6g34457 Nelumbo nucifera HOM05D006832 ORTHO05D008292 5.0e-06 56.2 360 28.1
VMungo1080G1649 Vigna mungo HOM05D006832 ORTHO05D008292 8.5e-06 55.5 57 45.6


User provided reference genes

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