Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09227 Corylus avellana HOM05D000028 ORTHO05D044785 1.2e-49 199.5 103 100.0
Cfa011878 Carpinus fangiana HOM05D000028 ORTHO05D001176 1.3e-19 99.8 52 90.4
Dinv12392 Davidia involucrata HOM05D000028 ORTHO05D001176 9.9e-15 83.6 52 71.2
Potri.011G148600 Populus trichocarpa HOM05D000028 ORTHO05D001176 3.8e-14 81.6 47 78.7
Sabra11G0133800 Salix brachista HOM05D000028 ORTHO05D001176 8.4e-14 80.5 51 72.5
Sabra11G0133600 Salix brachista HOM05D000028 ORTHO05D001176 1.4e-13 79.7 47 76.6
CDE02G4218 Ceratophyllum demersum HOM05D000028 ORTHO05D001176 2.7e-12 75.5 52 63.5
CDE11G1227 Ceratophyllum demersum HOM05D000028 ORTHO05D001176 2.7e-12 75.5 52 63.5
QL02p026818 Quercus lobata HOM05D000028 ORTHO05D001176 1.0e-11 73.6 52 67.3
Nn5g28737 Nelumbo nucifera HOM05D000028 ORTHO05D001176 1.7e-11 72.8 55 61.8
Nn1g06083 Nelumbo nucifera HOM05D000028 ORTHO05D001176 3.0e-11 72.0 55 61.8
PSO238G0029 Papaver somniferum HOM05D000028 ORTHO05D001176 8.7e-11 70.5 55 54.5
MELO3C008342.2 Cucumis melo HOM05D000028 ORTHO05D001176 1.1e-10 70.1 53 58.5
MBI05_g43775_MAGBIO Magnolia biondii HOM05D000028 ORTHO05D001176 1.1e-10 70.1 54 59.3
PSO210G1437 Papaver somniferum HOM05D000028 ORTHO05D001176 2.5e-10 68.9 55 54.5
PSO447G0262 Papaver somniferum HOM05D000028 ORTHO05D001176 2.5e-10 68.9 55 54.5
CsaV3_6G005240 Cucumis sativus L. HOM05D000028 ORTHO05D001176 4.3e-10 68.2 52 57.7
PGR042G3329 Punica granatum HOM05D000028 ORTHO05D001176 4.3e-10 68.2 55 56.4
TAR625G0985 Trochodendron aralioides HOM05D000028 ORTHO05D001176 4.3e-10 68.2 61 50.8
Aqoxy5G02087 Aquilegia oxysepala HOM05D000028 ORTHO05D001176 5.6e-10 67.8 55 54.5
TAR625G1549 Trochodendron aralioides HOM05D000028 ORTHO05D001176 1.3e-09 66.6 57 52.6
Thecc.08G151700 Theobroma cacao HOM05D000028 ORTHO05D001176 1.6e-09 66.2 52 59.6
CiPaw.15G016300 Carya illinoinensis HOM05D000028 ORTHO05D001176 2.1e-09 65.9 55 50.9
TAR381G0474 Trochodendron aralioides HOM05D000028 ORTHO05D001176 2.1e-09 65.9 55 54.5
Cc10_g14820 Coffea canephora HOM05D000028 ORTHO05D001176 2.8e-09 65.5 55 50.9
Gohir.A05G243400 Gossypium hirsutum HOM05D000028 ORTHO05D001176 2.8e-09 65.5 52 57.7
Gohir.D05G244800 Gossypium hirsutum HOM05D000028 ORTHO05D001176 2.8e-09 65.5 52 57.7
Gorai.009G254000 Gossypium raimondii HOM05D000028 ORTHO05D001176 2.8e-09 65.5 52 57.7
MD05G1024800 Malus domestica HOM05D000028 ORTHO05D001176 2.8e-09 65.5 52 57.7
TAR376G0279 Trochodendron aralioides HOM05D000028 ORTHO05D001176 2.8e-09 65.5 55 52.7
Atru.chr13.2119 Acer truncatum HOM05D000028 ORTHO05D001176 3.6e-09 65.1 55 54.5
Thecc.08G151800 Theobroma cacao HOM05D000028 ORTHO05D001176 3.6e-09 65.1 52 59.6
Duzib116G0369 Durio zibethinus HOM05D000028 ORTHO05D001176 4.8e-09 64.7 52 57.7
Prupe.8G028900 Prunus persica HOM05D000028 ORTHO05D001176 4.8e-09 64.7 52 57.7
Actinidia17795 Actinidia chinensis HOM05D000028 ORTHO05D001176 6.2e-09 64.3 52 53.8
CAN.G268.16 Capsicum annuum HOM05D000028 ORTHO05D001176 6.2e-09 64.3 52 53.8
Cc10_g12900 Coffea canephora HOM05D000028 ORTHO05D001176 6.2e-09 64.3 51 54.9
Manes.02G179300 Manihot esculenta HOM05D000028 ORTHO05D001176 6.2e-09 64.3 57 50.9
Nitab4.5_0005705g0030 Nicotiana tabacum HOM05D000028 ORTHO05D001176 6.2e-09 64.3 52 55.8
Potri.002G068300 Populus trichocarpa HOM05D000028 ORTHO05D001176 6.2e-09 64.3 50 56.0
GSVIVG01034524001 Vitis vinifera HOM05D000028 ORTHO05D001176 6.2e-09 64.3 55 50.9
Dinv25861 Davidia involucrata HOM05D000028 ORTHO05D001176 8.1e-09 63.9 52 53.8
SalBow7G3486 Salvia bowleyana HOM05D000028 ORTHO05D001176 8.1e-09 63.9 52 55.8
ClCG08G006990 Citrullus lanatus HOM05D000028 ORTHO05D001176 1.1e-08 63.5 52 53.8
MD10G1025300 Malus domestica HOM05D000028 ORTHO05D001176 1.1e-08 63.5 52 55.8
TAR362G0684 Trochodendron aralioides HOM05D000028 ORTHO05D001176 1.1e-08 63.5 52 55.8
ATR0820G220 Amborella trichopoda HOM05D000028 ORTHO05D001176 1.4e-08 63.2 51 58.8
Cpa.g.c31884.1 Carica papaya HOM05D000028 ORTHO05D001176 1.4e-08 63.2 52 51.9
Sed0003693 Sechium edule HOM05D000028 ORTHO05D001176 1.4e-08 63.2 55 52.7
Ciclev10001572m.g Citrus clementina HOM05D000028 ORTHO05D001176 1.8e-08 62.8 55 49.1
Hma1.2p1_0105F.1_g050720 Hydrangea macrophylla HOM05D000028 ORTHO05D001176 1.8e-08 62.8 52 51.9
Oeu046036.1 Olea europaea HOM05D000028 ORTHO05D001176 1.8e-08 62.8 52 55.8
Sabra05G0146800 Salix brachista HOM05D000028 ORTHO05D001176 1.8e-08 62.8 52 53.8
ATR0820G056 Amborella trichopoda HOM05D000028 ORTHO05D001176 2.4e-08 62.4 52 51.9
Potri.005G192100 Populus trichocarpa HOM05D000028 ORTHO05D001176 2.4e-08 62.4 52 51.9
RcHm_v2.0_Chr6g0275461 Rosa chinensis HOM05D000028 ORTHO05D001176 2.4e-08 62.4 52 53.8
Duzib041G0168 Durio zibethinus HOM05D000028 ORTHO05D001176 3.1e-08 62.0 52 53.8
Peaxi162Scf00664g00056 Petunia axillaris HOM05D000028 ORTHO05D001176 3.1e-08 62.0 52 48.1
QL02p023888 Quercus lobata HOM05D000028 ORTHO05D001176 3.1e-08 62.0 55 52.7
PGSC0003DMG400024106 Solanum tuberosum HOM05D000028 ORTHO05D001176 3.1e-08 62.0 52 50.0
COL.COLO4_05742 Corchorus olitorius HOM05D000028 ORTHO05D001176 4.0e-08 61.6 50 56.0
Migut.C01018 Erythranthe guttata HOM05D000028 ORTHO05D001176 4.0e-08 61.6 52 53.8
FAN20G2073 Fragaria x ananassa HOM05D000028 ORTHO05D001176 4.0e-08 61.6 55 52.7
Lj7C373G3 Lonicera japonica HOM05D000028 ORTHO05D001176 4.0e-08 61.6 52 51.9
Solyc04g071400.4 Solanum lycopersicum HOM05D000028 ORTHO05D001176 4.0e-08 61.6 52 51.9
Sopen04g027350 Solanum pennellii HOM05D000028 ORTHO05D001176 4.0e-08 61.6 52 51.9
vmacro00864 Vaccinium macrocarpon HOM05D000028 ORTHO05D001176 6.9e-08 60.8 57 49.1
Actinidia17792 Actinidia chinensis HOM05D000028 ORTHO05D001176 9.0e-08 60.5 52 51.9
COL.COLO4_37823 Corchorus olitorius HOM05D000028 ORTHO05D001176 9.0e-08 60.5 52 51.9
Haze_17753 Corylus avellana HOM05D000028 ORTHO05D001176 9.0e-08 60.5 52 50.0
FAN15G1071 Fragaria x ananassa HOM05D000028 ORTHO05D001176 1.2e-07 60.1 52 53.8
FAN24G1406 Fragaria x ananassa HOM05D000028 ORTHO05D001176 1.2e-07 60.1 52 53.8
FAN27G0511 Fragaria x ananassa HOM05D000028 ORTHO05D001176 1.2e-07 60.1 52 53.8
MSTRG.1364 Avicennia marina HOM05D000028 ORTHO05D001176 1.5e-07 59.7 52 50.0
Dinv41083 Davidia involucrata HOM05D000028 ORTHO05D001176 1.5e-07 59.7 52 50.0
Dinv41085 Davidia involucrata HOM05D000028 ORTHO05D001176 1.5e-07 59.7 52 50.0
Eucgr.F02706 Eucalyptus grandis HOM05D000028 ORTHO05D001176 1.5e-07 59.7 55 50.9
ATR0579G021 Amborella trichopoda HOM05D000028 ORTHO05D001176 2.0e-07 59.3 50 54.0
HanXRQChr10g0278971 Helianthus annuus HOM05D000028 ORTHO05D001176 2.0e-07 59.3 52 51.9
SalBow6G3261 Salvia bowleyana HOM05D000028 ORTHO05D001176 2.0e-07 59.3 52 53.8
SGA_v2.0_scaffold48G17960 Striga asiatica HOM05D000028 ORTHO05D001176 2.0e-07 59.3 52 53.8
Actinidia29528 Actinidia chinensis HOM05D000028 ORTHO05D001176 2.6e-07 58.9 52 50.0
ATR0579G099 Amborella trichopoda HOM05D000028 ORTHO05D001176 2.6e-07 58.9 52 48.1
Thhalv10004517m.g Eutrema salsugineum HOM05D000028 ORTHO05D001176 2.6e-07 58.9 55 49.1
Cc10_g14810 Coffea canephora HOM05D000028 ORTHO05D001176 3.4e-07 58.5 52 46.2
Hma1.2p1_0105F.1_g050700 Hydrangea macrophylla HOM05D000028 ORTHO05D001176 3.4e-07 58.5 50 50.0
Rhsim05G0105300 Rhododendron simsii HOM05D000028 ORTHO05D001176 3.4e-07 58.5 50 54.0
Actinidia17794 Actinidia chinensis HOM05D000028 ORTHO05D001176 5.8e-07 57.8 55 52.7
Lj2C148T22 Lonicera japonica HOM05D000028 ORTHO05D001176 5.8e-07 57.8 52 48.1
ATR0579G002 Amborella trichopoda HOM05D000028 ORTHO05D000296 7.6e-07 57.4 55 45.5
ATR0691G136 Amborella trichopoda HOM05D000028 ORTHO05D001176 7.6e-07 57.4 52 48.1
AL1G51770 Arabidopsis lyrata HOM05D000028 ORTHO05D001176 7.6e-07 57.4 55 45.5
Carub.0001s3468 Capsella rubella HOM05D000028 ORTHO05D001176 9.9e-07 57.0 52 46.2
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 9.9e-07 57.0 52 50.0
HanXRQChr05g0161941 Helianthus annuus HOM05D000028 ORTHO05D001176 9.9e-07 57.0 52 50.0
ATR0332G074 Amborella trichopoda HOM05D000028 ORTHO05D000296 1.3e-06 56.6 52 46.2
CSS0004012 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D001176 1.3e-06 56.6 50 52.0
MSTRG.25322 Avicennia marina HOM05D000028 ORTHO05D001176 1.7e-06 56.2 54 50.0
BcaC07g37314 Brassica carinata HOM05D000028 ORTHO05D001176 1.7e-06 56.2 52 46.2
A08p06490 Brassica napus HOM05D000028 ORTHO05D001176 1.7e-06 56.2 52 46.2
C08p07490 Brassica napus HOM05D000028 ORTHO05D001176 1.7e-06 56.2 52 46.2
BolC8t47596H Brassica oleracea HOM05D000028 ORTHO05D001176 1.7e-06 56.2 52 46.2
BraA08t32659Z Brassica rapa HOM05D000028 ORTHO05D001176 1.7e-06 56.2 52 46.2
Cc09_g02950 Coffea canephora HOM05D000028 ORTHO05D001176 1.7e-06 56.2 52 50.0
Migut.C01019 Erythranthe guttata HOM05D000028 ORTHO05D001176 1.7e-06 56.2 52 53.8
Lj7A373T37 Lonicera japonica HOM05D000028 ORTHO05D001176 1.7e-06 56.2 55 45.5
SalBow7G1070 Salvia bowleyana HOM05D000028 ORTHO05D001176 1.7e-06 56.2 51 56.9
SalBow7G1641 Salvia bowleyana HOM05D000028 ORTHO05D001176 1.7e-06 56.2 51 56.9
Sp1g32600 Schrenkiella parvula HOM05D000028 ORTHO05D001176 1.7e-06 56.2 55 43.6
TWI34G1730 Tripterygium wilfordii HOM05D000028 ORTHO05D001176 1.7e-06 56.2 55 47.3
AT1G43650 Arabidopsis thaliana HOM05D000028 ORTHO05D001176 2.2e-06 55.8 55 43.6
Dinv25864 Davidia involucrata HOM05D000028 ORTHO05D001176 2.2e-06 55.8 50 54.0
Dinv41081 Davidia involucrata HOM05D000028 ORTHO05D001176 2.2e-06 55.8 51 52.9
Lalb_Chr06g0169371 Lupinus albus HOM05D000028 ORTHO05D004476 2.2e-06 55.8 51 47.1
THA.LOC104806857 Tarenaya hassleriana HOM05D000028 ORTHO05D001176 2.2e-06 55.8 55 43.6
VMungo0464G1039 Vigna mungo HOM05D000028 ORTHO05D001176 2.2e-06 55.8 52 51.9
CARHR035620 Cardamine hirsuta HOM05D000028 ORTHO05D001176 2.9e-06 55.5 55 45.5
Cc07_g19990 Coffea canephora HOM05D000028 ORTHO05D001176 2.9e-06 55.5 50 52.0
Glyma.02G081900 Glycine max HOM05D000028 ORTHO05D001176 2.9e-06 55.5 52 51.9
Lj7A376T35 Lonicera japonica HOM05D000028 ORTHO05D001176 2.9e-06 55.5 51 49.0
Lalb_Chr01g0009591 Lupinus albus HOM05D000028 ORTHO05D044785 2.9e-06 55.5 53 50.9
SalBow7G1087 Salvia bowleyana HOM05D000028 ORTHO05D001176 2.9e-06 55.5 52 55.8
SalBow7G3235 Salvia bowleyana HOM05D000028 ORTHO05D001176 2.9e-06 55.5 52 55.8
SalBow7G3699 Salvia bowleyana HOM05D000028 ORTHO05D001176 2.9e-06 55.5 52 55.8
unitig_699.g19745 Utricularia gibba HOM05D000028 ORTHO05D001176 2.9e-06 55.5 56 44.6
ATR0332G086 Amborella trichopoda HOM05D000028 ORTHO05D000296 3.8e-06 55.1 52 46.2
CDE08G0760 Ceratophyllum demersum HOM05D000028 ORTHO05D001176 3.8e-06 55.1 52 46.2
Dinv41082 Davidia involucrata HOM05D000028 ORTHO05D001176 3.8e-06 55.1 55 47.3
Lsat_1_v5_gn_6_101180 Lactuca sativa HOM05D000028 ORTHO05D001176 3.8e-06 55.1 52 44.2
Phvul.004G095100 Phaseolus vulgaris HOM05D000028 ORTHO05D001176 3.8e-06 55.1 52 50.0
CiPaw.11G107500 Carya illinoinensis HOM05D000028 ORTHO05D001176 4.9e-06 54.7 55 47.3
Manes.01G000600 Manihot esculenta HOM05D000028 ORTHO05D001176 4.9e-06 54.7 55 47.3
Nitab4.5_0009647g0010 Nicotiana tabacum HOM05D000028 ORTHO05D001176 4.9e-06 54.7 52 50.0
TAR376G0987 Trochodendron aralioides HOM05D000028 ORTHO05D001176 4.9e-06 54.7 52 50.0
COL.COLO4_10858 Corchorus olitorius HOM05D000028 ORTHO05D001176 6.4e-06 54.3 51 49.0
Potri.011G148400 Populus trichocarpa HOM05D000028 ORTHO05D001176 6.4e-06 54.3 52 46.2
SGA_v2.0_scaffold24G10373 Striga asiatica HOM05D000028 ORTHO05D001176 6.4e-06 54.3 52 44.2
CAN.G268.19 Capsicum annuum HOM05D000028 ORTHO05D001176 8.4e-06 53.9 52 48.1
Nitab4.5_0001062g0020 Nicotiana tabacum HOM05D000028 ORTHO05D001176 8.4e-06 53.9 52 48.1


User provided reference genes

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