Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 4.0e-232 807.7 412 100.0
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 4.9e-222 774.2 412 96.4
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 1.5e-186 656.4 411 82.5
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 1.3e-182 643.3 412 80.3
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.1e-178 630.2 413 76.3
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 2.5e-178 629.0 412 77.4
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.0e-176 621.7 414 76.3
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.9e-176 620.9 414 76.3
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 4.5e-175 618.2 419 74.2
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 1.7e-174 616.3 414 76.1
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.7e-174 616.3 414 76.1
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.5e-173 612.5 414 75.4
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 4.2e-173 611.7 411 74.9
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 7.9e-172 607.4 414 73.7
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.2e-167 593.6 412 72.8
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.5e-167 593.2 410 74.1
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 3.4e-167 592.0 411 72.7
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 3.8e-166 588.6 416 71.9
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 5.0e-166 588.2 414 73.2
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.9e-165 586.3 479 63.7
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 2.5e-165 585.9 413 72.6
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 4.2e-165 585.1 415 73.0
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 7.1e-165 584.3 382 77.5
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 2.7e-164 582.4 414 72.9
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 3.5e-164 582.0 412 72.1
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.0e-163 580.5 440 67.0
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 3.9e-163 578.6 411 70.6
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 1.1e-162 577.0 414 73.4
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 7.4e-162 574.3 411 70.6
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 4.8e-161 571.6 414 71.5
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.4e-160 570.1 411 70.1
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.8e-160 569.7 405 73.1
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 3.1e-160 568.9 414 71.7
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.2e-159 567.0 413 70.7
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 5.9e-159 564.7 419 68.7
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 2.9e-158 562.4 414 68.6
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.8e-158 562.0 412 67.2
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 8.5e-158 560.8 412 69.4
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.4e-157 560.1 387 73.4
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 4.2e-157 558.5 414 70.3
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 5.5e-157 558.1 411 70.8
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 7.2e-157 557.8 410 70.5
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.3e-155 552.7 412 66.7
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 3.0e-155 552.4 414 69.8
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 3.9e-155 552.0 410 68.8
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 5.1e-155 551.6 412 68.2
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 6.7e-155 551.2 412 69.9
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 8.8e-155 550.8 412 68.4
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.5e-154 550.1 414 69.8
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.3e-154 548.5 386 70.5
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 4.3e-154 548.5 413 69.5
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 3.7e-153 545.4 414 65.9
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 8.2e-153 544.3 398 70.4
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 2.4e-152 542.7 414 69.1
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 6.1e-148 528.1 406 68.0
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 7.9e-148 527.7 384 68.8
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 1.0e-147 527.3 411 66.7
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.8e-147 526.6 408 65.0
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.3e-147 526.2 417 68.3
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 3.9e-147 525.4 413 67.3
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 3.9e-147 525.4 412 64.1
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.5e-146 523.5 410 65.1
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.3e-145 520.4 391 68.0
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 2.8e-145 519.2 415 63.6
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 9.1e-144 514.2 414 63.8
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.5e-143 513.5 352 73.6
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.5e-143 513.5 412 65.0
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 1.0e-142 510.8 416 65.6
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.8e-142 508.8 413 63.4
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 2.1e-140 503.1 421 60.8
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.0e-139 500.7 350 74.0
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 1.5e-138 496.9 395 63.3
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 7.5e-138 494.6 362 69.3
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.1e-136 490.7 421 60.1
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.8e-136 490.0 412 60.2
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 9.1e-136 487.6 405 60.5
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.9e-133 479.9 344 73.0
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 4.2e-133 478.8 386 62.7
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 3.4e-130 469.2 414 58.9
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 2.8e-129 466.1 418 58.4
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 5.9e-127 458.4 424 58.0
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 7.7e-127 458.0 359 63.2
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.3e-126 457.2 446 57.8
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.9e-125 453.4 392 58.4
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 2.5e-125 453.0 344 66.9
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 9.4e-125 451.1 352 66.8
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 2.1e-124 449.9 351 64.1
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 2.7e-124 449.5 421 58.7
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 6.8e-123 444.9 420 58.3
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 4.4e-122 442.2 399 59.1
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 2.2e-121 439.9 419 57.8
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 4.9e-121 438.7 413 55.4
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 6.3e-121 438.3 420 58.1
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.3e-121 438.0 418 58.6
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 8.3e-121 438.0 423 58.2
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.1e-120 437.6 301 75.1
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 2.4e-120 436.4 422 56.9
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.6e-119 433.7 396 59.8
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 8.0e-116 421.4 359 61.3
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 3.0e-115 419.5 422 57.6
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 9.8e-114 414.5 420 54.3
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 9.8e-114 414.5 457 49.5
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 4.9e-113 412.1 420 54.0
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 6.4e-113 411.8 428 50.2
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.2e-111 407.5 470 48.1
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 7.8e-95 351.7 265 66.8
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 8.1e-92 341.7 370 47.8
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 9.9e-90 334.7 352 55.1
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 9.6e-85 318.2 465 38.5
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.2e-84 317.8 426 40.6
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 4.0e-83 312.8 224 71.4
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.3e-78 297.0 316 50.0
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.3e-77 292.7 191 78.0
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 5.6e-77 292.4 198 75.8
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.3e-73 281.2 278 54.7
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.1e-69 268.1 188 72.3
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.1e-64 251.5 157 79.6
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 5.5e-64 249.2 393 39.4
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 2.2e-57 227.3 238 52.1
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 1.2e-47 194.9 130 76.2
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.2e-47 194.9 134 75.4
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 2.5e-45 187.2 403 31.0
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 9.7e-45 185.3 277 41.9
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.5e-40 170.6 172 55.2
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.4e-38 164.9 119 73.1
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 5.1e-38 162.9 303 34.7
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 8.8e-38 162.2 319 31.7
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.3e-37 160.2 136 61.8
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 6.3e-36 156.0 166 53.0
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.5e-32 144.1 107 64.5
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 7.0e-27 125.9 597 23.8
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 8.5e-25 119.0 78 73.1
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 3.1e-19 100.5 135 42.2
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 4.4e-13 80.1 51 76.5
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 1.3e-12 78.6 92 47.8
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 3.5e-10 70.5 104 45.2
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 1.1e-08 65.5 324 24.1
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 7.2e-08 62.8 153 30.7
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 6.1e-07 59.7 81 42.0
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 1.8e-06 58.2 31 80.6


User provided reference genes

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