Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 0.0e+00 1426.4 718 100.0
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 0.0e+00 1182.9 675 90.2
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 1.3e-262 909.8 683 70.6
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 5.6e-165 585.5 677 50.7
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 6.2e-148 528.9 726 47.1
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 4.6e-143 512.7 726 45.3
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 1.8e-134 484.2 751 43.3
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 6.7e-134 482.3 671 44.4
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 2.2e-129 467.2 504 48.6
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 9.3e-128 461.8 502 50.2
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.8e-124 450.3 685 43.9
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 1.7e-121 441.0 597 44.1
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 1.4e-120 438.0 533 47.5
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 1.0e-118 431.8 515 48.3
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 5.1e-118 429.5 673 42.5
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 7.4e-117 425.6 724 40.9
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 1.9e-112 411.0 682 41.3
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 2.6e-109 400.6 557 43.4
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 8.0e-103 379.0 612 42.6
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 2.2e-97 360.9 559 42.2
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 1.6e-95 354.8 675 38.5
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 2.7e-95 354.0 591 39.8
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 3.0e-94 350.5 673 38.5
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 8.8e-94 349.0 654 37.2
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 2.6e-93 347.4 450 44.9
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 5.7e-93 346.3 848 32.1
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 2.4e-91 340.9 630 37.9
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 4.1e-91 340.1 636 35.1
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 3.5e-90 337.0 520 42.9
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 1.3e-89 335.1 350 50.9
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 5.0e-89 333.2 515 41.4
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 5.5e-88 329.7 504 41.9
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.1e-87 327.8 548 39.1
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 2.1e-87 327.8 378 49.2
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 5.7e-85 319.7 387 45.5
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.7e-84 318.2 396 47.2
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 3.5e-82 310.5 491 38.9
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 2.3e-81 307.8 390 47.7
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 2.3e-81 307.8 559 37.0
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 5.0e-81 306.6 565 38.1
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 1.1e-80 305.4 415 41.7
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 2.5e-80 304.3 385 47.3
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 4.2e-80 303.5 559 36.7
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.5e-80 302.4 395 45.8
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 2.1e-79 301.2 516 39.3
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.0e-78 297.0 679 35.9
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 6.8e-78 296.2 436 42.9
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.4e-77 293.5 505 38.6
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 5.4e-75 286.6 713 32.7
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 3.8e-73 280.4 396 40.7
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 3.8e-73 280.4 357 47.1
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 5.0e-73 280.0 410 42.2
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 4.0e-70 270.4 423 40.7
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 3.7e-68 263.8 254 58.3
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 5.4e-67 260.0 608 31.2
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 1.3e-65 255.4 390 38.5
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.2e-58 232.3 323 44.0
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 3.0e-57 227.6 548 33.0
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 8.6e-57 226.1 249 49.0
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 8.1e-55 219.5 555 30.1
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 1.1e-54 219.2 578 31.1
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 6.8e-54 216.5 247 49.8
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 1.5e-53 215.3 228 51.8
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 2.9e-52 211.1 412 35.9
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 2.9e-52 211.1 301 41.2
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.6e-50 203.8 681 30.4
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.0e-49 202.6 231 47.6
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 9.5e-48 196.1 499 31.7
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 8.1e-47 193.0 196 50.0
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 1.4e-46 192.2 258 42.2
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 2.4e-46 191.4 241 44.4
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 3.1e-46 191.0 242 43.8
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 5.2e-46 190.3 137 69.3
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 2.2e-44 184.9 214 47.2
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.9e-44 184.5 233 45.5
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.7e-41 175.3 172 55.2
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 4.7e-39 167.2 244 43.0
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 2.6e-37 161.4 276 39.9
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 1.1e-35 156.0 406 33.5
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 4.2e-35 154.1 198 43.9
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 1.1e-32 146.0 403 30.5
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 3.6e-31 141.0 128 62.5
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.9e-26 123.2 139 46.8
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 1.8e-25 122.1 130 50.0
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 2.3e-25 121.7 220 32.7
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 6.7e-25 120.2 268 35.4
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.5e-24 118.2 143 50.3
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-23 115.5 137 50.4
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.1e-23 115.2 143 49.0
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.2e-23 113.6 133 50.4
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 1.1e-22 112.8 208 36.5
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.4e-22 111.7 143 48.3
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.6e-21 108.2 105 57.1
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-21 107.8 95 64.2
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 5.8e-21 107.1 85 68.2
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 7.6e-21 106.7 133 49.6
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 1.7e-20 105.5 132 47.0
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.9e-19 102.1 101 51.5
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.2e-19 101.3 115 49.6
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 3.2e-19 101.3 129 49.6
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 4.6e-18 97.4 132 44.7
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 1.0e-17 96.3 232 28.4
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.3e-17 95.1 80 58.8
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 8.7e-17 93.2 85 58.8
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 4.3e-16 90.9 179 38.5
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 2.1e-15 88.6 301 30.2
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 2.1e-15 88.6 173 38.2
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 6.2e-15 87.0 178 37.6
SHI06954 Sapria himalayana HOM05D000023 ORTHO05D000014 1.4e-14 85.9 103 45.6
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 2.0e-13 82.0 62 61.3
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.6e-13 81.6 65 61.5
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 1.7e-12 79.0 302 28.1
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 3.2e-11 74.7 274 29.2
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.2e-10 72.8 117 41.0
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 2.3e-09 68.6 79 46.8
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 5.1e-09 67.4 72 47.2
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 8.7e-09 66.6 199 28.1
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 8.7e-09 66.6 146 33.6
Eucgr.E00971 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.9e-08 65.5 69 52.2
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 5.7e-08 63.9 72 45.8
Eucgr.E00710 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-07 62.8 70 48.6
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 1.3e-07 62.8 36 72.2
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 2.2e-07 62.0 43 60.5
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.8e-07 61.6 46 63.0
HanXRQChr03g0083731 Helianthus annuus HOM05D005777 ORTHO05D006854 4.8e-07 60.8 90 38.9
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.4e-06 59.3 35 74.3


User provided reference genes

Program Settings