Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 5.7e-50 200.7 106 100.0
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.9e-46 188.3 106 96.2
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.1e-32 141.4 106 79.2
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 3.5e-31 138.3 102 75.5
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.6e-30 133.7 101 76.2
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.2e-27 124.4 109 70.6
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.5e-26 122.9 105 66.7
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 2.6e-26 122.1 102 69.6
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.5e-26 120.6 104 69.2
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 9.8e-26 120.2 112 66.1
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.2e-25 119.0 101 67.3
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.9e-25 118.6 104 69.2
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.9e-25 118.6 104 68.3
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.4e-25 117.5 103 68.0
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 6.4e-25 117.5 109 66.1
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.1e-24 116.7 103 65.0
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.9e-24 115.9 102 67.6
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.9e-24 115.9 104 67.3
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.4e-24 115.5 103 67.0
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.0e-23 110.9 103 65.0
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.0e-22 110.2 103 63.1
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.7e-22 109.4 102 64.7
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.9e-22 108.2 106 64.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 5.0e-22 107.8 105 61.0
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 5.0e-22 107.8 93 63.4
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 6.6e-22 107.5 95 62.1
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 8.6e-22 107.1 103 65.0
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 1.5e-21 106.3 105 61.9
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 3.3e-21 105.1 95 60.0
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.2e-20 103.2 111 58.6
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.6e-20 102.8 94 67.0
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 2.1e-20 102.4 106 58.5
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.1e-20 102.4 95 64.2
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 4.7e-20 101.3 87 64.4
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.7e-20 101.3 103 60.2
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 8.1e-20 100.5 95 60.0
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.8e-19 97.4 95 58.9
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 8.9e-19 97.1 97 68.0
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.5e-18 96.3 87 62.1
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.5e-18 96.3 103 58.3
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.5e-18 96.3 87 60.9
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 2.0e-18 95.9 107 54.2
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.0e-18 95.9 87 62.1
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.0e-18 95.9 99 60.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 5.8e-18 94.4 93 59.1
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 9.8e-18 93.6 99 59.6
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 1.3e-17 93.2 71 70.4
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.9e-16 89.4 90 53.3
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.9e-16 89.4 80 61.2
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.4e-16 87.8 108 50.0
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 7.1e-16 87.4 93 59.1
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 9.2e-16 87.0 115 49.6
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.1e-15 85.9 109 50.5
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 6.0e-15 84.3 84 64.3
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.0e-14 83.6 95 54.7
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 1.3e-14 83.2 94 60.6
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.3e-14 82.4 103 52.4
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.0e-14 82.0 86 57.0
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 3.0e-14 82.0 73 65.8
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.6e-14 80.9 108 49.1
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 8.6e-14 80.5 108 49.1
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.6e-14 80.5 108 49.1
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 1.1e-13 80.1 108 50.0
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.5e-13 79.7 108 49.1
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.9e-13 79.3 94 52.1
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.5e-13 79.0 103 52.4
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 3.3e-13 78.6 75 65.3
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 4.3e-13 78.2 97 49.5
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 7.3e-13 77.4 80 60.0
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 7.3e-13 77.4 100 54.0
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 9.5e-13 77.0 72 65.3
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.5e-13 77.0 108 47.2
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.2e-12 76.6 99 52.5
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 2.8e-12 75.5 71 62.0
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.8e-12 75.5 101 52.5
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.8e-12 75.5 109 50.5
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.6e-12 75.1 99 51.5
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 4.7e-12 74.7 71 62.0
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 6.2e-12 74.3 68 61.8
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.1e-11 73.6 68 60.3
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.1e-11 73.6 101 47.5
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 1.1e-11 73.6 96 50.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.4e-11 73.2 104 50.0
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.4e-11 73.2 71 59.2
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.4e-11 73.2 94 47.9
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.8e-11 72.8 76 60.5
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.0e-11 71.6 94 48.9
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 5.2e-11 71.2 74 58.1
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.2e-10 70.1 118 44.1
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.2e-10 70.1 92 47.8
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.3e-09 66.6 74 54.1
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.7e-09 66.2 97 44.3
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.7e-09 66.2 92 47.8
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-09 65.9 97 46.4
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-09 65.9 92 46.7
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-09 65.9 97 46.4
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 2.2e-09 65.9 97 46.4
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 2.2e-09 65.9 92 46.7
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.2e-09 65.9 89 47.2
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.9e-09 65.5 62 64.5
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 3.8e-09 65.1 108 42.6
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.8e-09 65.1 78 55.1
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.8e-09 65.1 89 51.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.9e-09 64.7 78 53.8
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 4.9e-09 64.7 100 48.0
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 6.4e-09 64.3 101 47.5
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 6.4e-09 64.3 48 64.6
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-08 63.5 97 46.4
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.1e-08 63.5 81 51.9
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.4e-08 63.2 90 45.6
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.9e-08 62.8 57 54.4
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.9e-08 62.8 92 46.7
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.4e-08 62.4 92 48.9
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.4e-08 62.4 93 47.3
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.4e-08 62.4 92 47.8
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.4e-08 62.4 101 44.6
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-08 62.0 92 45.7
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 3.2e-08 62.0 101 44.6
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 3.2e-08 62.0 73 52.1
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 4.1e-08 61.6 92 45.7
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 4.1e-08 61.6 92 45.7
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 5.4e-08 61.2 103 43.7
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 9.2e-08 60.5 92 43.5
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 9.2e-08 60.5 92 43.5
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 9.2e-08 60.5 102 44.1
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.2e-07 60.1 80 45.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-07 60.1 45 66.7
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.2e-07 60.1 112 42.9
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 1.6e-07 59.7 52 63.5
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.6e-07 59.7 92 46.7
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-07 59.7 92 44.6
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.6e-07 59.7 44 63.6
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 2.1e-07 59.3 90 44.4
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.1e-07 59.3 98 43.9
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 2.1e-07 59.3 102 45.1
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 2.7e-07 58.9 92 42.4
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 2.7e-07 58.9 92 42.4
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 2.7e-07 58.9 92 42.4
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 3.5e-07 58.5 101 43.6
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 4.6e-07 58.2 91 51.6
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 4.6e-07 58.2 86 44.2
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 4.6e-07 58.2 85 48.2
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 4.6e-07 58.2 67 55.2
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.6e-07 58.2 88 44.3
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-07 57.8 92 43.5
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 7.8e-07 57.4 100 39.0
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 7.8e-07 57.4 72 47.2
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.3e-06 56.6 68 54.4
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.3e-06 56.6 93 45.2
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 1.7e-06 56.2 40 72.5
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 2.3e-06 55.8 43 69.8
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 2.3e-06 55.8 70 52.9
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 2.3e-06 55.8 42 66.7
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 3.0e-06 55.5 41 68.3
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 3.0e-06 55.5 41 68.3
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 3.0e-06 55.5 41 68.3
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 3.0e-06 55.5 69 50.7
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 3.9e-06 55.1 70 51.4
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.9e-06 55.1 101 40.6
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 5.1e-06 54.7 67 50.7
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 5.1e-06 54.7 76 46.1
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 6.6e-06 54.3 47 59.6
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 6.6e-06 54.3 71 47.9


User provided reference genes

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