Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 3.2e-170 601.7 304 100.0
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 5.1e-136 488.0 317 82.3
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 5.1e-136 488.0 317 82.3
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 5.9e-124 448.0 289 77.9
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 3.8e-123 445.3 267 84.6
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 4.4e-119 431.8 309 72.8
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 4.4e-119 431.8 306 73.2
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 9.7e-119 430.6 299 75.3
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 9.7e-119 430.6 307 73.3
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 3.1e-117 425.6 314 71.7
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 5.3e-117 424.9 304 72.4
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 9.1e-117 424.1 313 70.3
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.6e-116 423.3 295 75.3
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 2.0e-116 422.9 258 81.0
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 2.7e-116 422.5 313 71.6
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.7e-116 422.5 329 68.1
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 2.7e-116 422.5 311 72.0
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 3.5e-116 422.2 313 71.2
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 3.5e-116 422.2 311 70.7
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 4.5e-116 421.8 302 72.8
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.9e-116 421.4 329 68.1
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 7.7e-116 421.0 266 78.6
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 7.7e-116 421.0 269 77.0
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.0e-115 420.6 307 70.7
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 2.9e-115 419.1 268 77.6
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 3.8e-115 418.7 305 70.8
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 5.0e-115 418.3 271 77.1
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 8.5e-115 417.5 267 77.2
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.1e-114 417.2 279 75.6
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.5e-114 416.8 298 70.8
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.5e-114 416.0 281 75.1
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 2.5e-114 416.0 305 68.9
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 3.2e-114 415.6 280 75.0
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 3.2e-114 415.6 286 74.8
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 3.2e-114 415.6 282 73.4
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 5.5e-114 414.8 299 70.6
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 5.5e-114 414.8 272 76.5
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 5.5e-114 414.8 304 69.4
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 9.4e-114 414.1 284 75.0
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.6e-113 413.3 286 73.1
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 2.1e-113 412.9 262 78.2
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 8.0e-113 411.0 267 75.3
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 8.0e-113 411.0 269 75.8
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.0e-112 410.6 286 71.3
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.8e-112 409.8 280 72.9
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.8e-112 409.8 304 71.1
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 2.3e-112 409.5 262 77.5
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.8e-112 407.9 313 68.7
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 8.8e-112 407.5 313 69.0
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.2e-111 407.1 262 77.1
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 3.4e-111 405.6 313 68.7
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 5.7e-111 404.8 282 72.3
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 5.7e-111 404.8 273 75.1
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-110 403.7 300 69.7
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.3e-110 403.7 300 69.7
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.7e-110 403.3 281 73.0
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 2.8e-110 402.5 299 70.9
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 4.8e-110 401.7 301 69.1
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 8.3e-110 401.0 266 76.3
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.1e-109 400.6 265 75.8
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 1.1e-109 400.6 264 75.0
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 4.1e-109 398.7 296 69.9
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 9.1e-109 397.5 318 67.0
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.0e-107 394.0 292 69.9
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 2.3e-107 392.9 275 69.1
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 2.3e-107 392.9 292 69.5
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 2.9e-107 392.5 271 71.2
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 3.8e-107 392.1 297 67.7
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 5.0e-107 391.7 284 71.5
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 3.3e-106 389.0 311 65.3
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 7.2e-106 387.9 314 66.6
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 7.2e-106 387.9 314 66.6
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 9.5e-106 387.5 268 73.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 4.7e-105 385.2 321 63.9
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 6.1e-105 384.8 268 72.8
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-104 384.0 233 80.7
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 2.3e-104 382.9 317 63.4
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 4.0e-104 382.1 346 59.5
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 6.8e-104 381.3 233 79.4
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 7.5e-103 377.9 301 64.5
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.7e-102 376.7 247 72.1
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 2.2e-102 376.3 282 64.9
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.8e-102 375.9 255 71.4
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.9e-102 375.2 243 76.5
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 6.3e-102 374.8 231 79.2
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 8.3e-102 374.4 241 76.3
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.8e-101 373.2 230 79.1
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 3.2e-101 372.5 411 52.3
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 3.2e-101 372.5 339 58.7
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 7.0e-101 371.3 268 70.1
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 2.0e-100 369.8 300 64.7
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.7e-99 366.7 265 70.9
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.9e-99 365.9 307 61.9
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.2e-97 360.5 247 71.3
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.0e-96 357.5 260 69.6
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.8e-96 356.7 199 93.5
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.8e-96 356.7 284 62.7
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.4e-93 345.1 270 68.5
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.8e-88 330.1 196 79.1
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.9e-86 322.0 241 68.9
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.4e-85 320.5 252 62.3
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.3e-83 313.9 298 55.7
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.7e-83 313.5 251 63.7
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 7.8e-76 288.1 220 66.8
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.0e-75 287.7 214 71.0
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.6e-73 280.4 198 66.2
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 3.1e-72 276.2 236 64.4
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 3.4e-71 272.7 223 66.4
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.9e-66 256.9 174 74.7
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-64 249.2 157 79.0
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 5.3e-64 248.8 193 69.9
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 4.4e-63 245.7 203 67.5
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 5.6e-58 228.8 222 56.8
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-56 224.2 171 67.3
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-55 220.7 171 66.1
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 3.4e-55 219.5 132 81.8
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 6.0e-52 208.8 228 52.6
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.2e-47 194.5 123 72.4
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 7.6e-47 191.8 162 64.8
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 7.6e-47 191.8 160 66.2
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-46 189.9 157 66.9
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-45 187.2 174 60.9
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-45 187.2 157 66.2
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-44 183.3 157 65.0
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.6e-44 182.6 157 66.2
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-43 180.6 173 60.7
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-42 177.2 175 58.9
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.4e-40 170.2 109 76.1
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-37 159.8 157 60.5
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 3.2e-37 159.8 106 74.5
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 4.2e-37 159.5 144 63.2
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.8e-35 154.1 107 72.0
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 3.9e-35 152.9 179 55.9
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 3.3e-34 149.8 339 35.1
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-34 149.4 96 81.2
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-33 147.1 159 56.6
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-33 147.1 159 56.6
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-33 146.7 99 76.8
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-32 142.9 134 61.9
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-31 141.4 126 62.7
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.6e-31 140.2 88 72.7
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-26 123.2 146 53.4
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.3e-25 121.3 73 75.3
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-24 116.3 109 61.5
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-22 109.8 161 43.5
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-21 108.2 66 84.8
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 7.0e-16 89.0 53 79.2
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 7.0e-16 89.0 59 72.9
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 9.1e-16 88.6 103 51.5
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-15 87.0 91 57.1
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 1.1e-08 65.1 113 38.1
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 3.1e-08 63.5 34 73.5
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.0e-06 58.5 129 32.6
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 2.2e-06 57.4 45 64.4
MELO3C034534.2 Cucumis melo HOM05D004703 ORTHO05D005801 6.5e-06 55.8 33 75.8


User provided reference genes

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