Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 2.0e-127 459.1 242 100.0
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 2.2e-113 412.5 211 99.1
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 2.1e-87 326.2 238 72.3
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 6.6e-86 321.2 236 71.6
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 3.9e-78 295.4 233 63.5
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 4.3e-77 292.0 232 63.4
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 5.6e-77 291.6 233 64.4
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 4.8e-76 288.5 236 63.1
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 6.2e-76 288.1 236 63.6
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 1.2e-74 283.9 200 70.0
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 4.5e-74 282.0 239 59.8
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 9.9e-74 280.8 217 64.1
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 4.2e-72 275.4 221 64.3
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 7.1e-72 274.6 228 63.6
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 1.6e-71 273.5 214 68.7
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 2.1e-71 273.1 218 62.8
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 3.5e-71 272.3 233 61.4
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 1.3e-70 270.4 213 63.8
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.3e-70 269.6 208 65.9
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 2.3e-70 269.6 232 61.2
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 6.7e-70 268.1 211 65.4
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 8.7e-70 267.7 233 59.2
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 8.7e-70 267.7 241 58.5
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 1.1e-69 267.3 234 59.8
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.9e-69 266.5 232 60.3
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 4.8e-68 261.9 237 58.2
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.8e-68 261.9 233 59.2
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 1.1e-67 260.8 187 69.0
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 3.1e-67 259.2 233 58.8
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 3.1e-67 259.2 214 60.7
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 6.9e-67 258.1 232 59.1
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 4.5e-66 255.4 215 60.9
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 4.5e-66 255.4 218 61.0
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 4.5e-66 255.4 218 61.0
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 4.5e-66 255.4 221 59.7
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 7.6e-66 254.6 215 59.1
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 1.0e-65 254.2 221 61.5
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 1.3e-65 253.8 229 56.3
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 1.3e-65 253.8 218 61.0
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 1.3e-65 253.8 220 60.0
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 3.8e-65 252.3 196 63.8
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 3.8e-65 252.3 213 59.6
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 4.9e-65 251.9 224 58.5
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.4e-64 250.4 223 60.1
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 1.4e-64 250.4 216 61.6
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 2.5e-64 249.6 217 56.7
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 4.2e-64 248.8 185 64.9
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 5.5e-64 248.4 255 54.9
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 5.5e-64 248.4 219 61.2
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 5.5e-64 248.4 226 58.0
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 7.1e-64 248.1 223 58.3
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 7.1e-64 248.1 216 58.3
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.2e-63 247.3 236 55.1
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 1.2e-63 247.3 222 59.9
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 1.6e-63 246.9 219 59.4
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 2.7e-63 246.1 184 66.8
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 2.7e-63 246.1 205 62.0
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 2.7e-63 246.1 234 55.6
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.7e-63 246.1 218 57.8
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 6.0e-63 245.0 235 54.0
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 7.9e-63 244.6 219 57.1
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 7.9e-63 244.6 219 60.3
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 7.9e-63 244.6 224 56.7
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 1.0e-62 244.2 229 55.9
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 1.3e-62 243.8 219 57.1
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 2.3e-62 243.0 238 55.0
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 2.3e-62 243.0 238 55.0
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 3.0e-62 242.7 203 62.1
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 8.7e-62 241.1 225 54.7
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 1.1e-61 240.7 230 54.8
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 1.1e-61 240.7 225 54.7
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 3.3e-61 239.2 225 54.7
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 7.4e-61 238.0 238 54.2
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 1.3e-60 237.3 178 66.3
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 1.6e-60 236.9 217 56.7
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 1.6e-60 236.9 216 59.7
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 1.1e-59 234.2 229 52.4
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 9.0e-59 231.1 231 53.2
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 2.0e-58 229.9 213 54.9
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 3.4e-58 229.2 213 55.4
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 1.3e-57 227.3 213 54.9
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 1.3e-57 227.3 213 54.9
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 1.7e-57 226.9 192 60.9
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 4.6e-55 218.8 219 53.4
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 3.7e-52 209.1 171 59.1
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 8.2e-52 208.0 195 58.5
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 3.8e-49 199.1 198 50.5
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 5.0e-49 198.7 179 57.0
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 9.4e-48 194.5 162 57.4
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 4.6e-47 192.2 134 68.7
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 3.0e-46 189.5 197 50.3
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 5.1e-46 188.7 161 60.9
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 8.8e-46 188.0 160 55.6
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.1e-43 179.5 132 62.9
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 1.5e-42 177.2 159 56.6
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 1.3e-36 157.5 116 64.7
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 1.8e-35 153.7 137 55.5
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 2.0e-34 150.2 154 54.5
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 4.5e-34 149.1 158 46.2
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.3e-33 147.5 99 69.7
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 6.5e-33 145.2 133 58.6
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 9.4e-32 141.4 161 47.2
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.2e-28 130.2 185 38.4
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 3.0e-22 109.8 105 54.3
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 5.7e-21 105.5 113 53.1
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 2.4e-19 100.1 168 32.7
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 7.7e-18 95.1 107 47.7
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 3.8e-17 92.8 160 30.6
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 8.5e-17 91.7 146 30.8
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 1.1e-16 91.3 115 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 7.0e-11 72.0 186 28.0
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 2.7e-10 70.1 56 64.3
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 3.8e-09 66.2 121 29.8
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.2e-07 61.2 195 23.6
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 4.7e-07 59.3 119 28.6
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 1.4e-06 57.8 116 29.3
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.4e-06 57.8 108 28.7
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 2.3e-06 57.0 107 29.9
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 3.0e-06 56.6 118 27.1
Aqoxy7G04125 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 4.0e-06 56.2 164 26.8
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 5.2e-06 55.8 124 30.6
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 8.9e-06 55.1 134 29.9
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 8.9e-06 55.1 100 26.0


User provided reference genes

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