Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 0.0e+00 1087.0 559 100.0
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 3.9e-283 977.6 559 91.4
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.8e-243 845.9 570 79.1
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.9e-224 782.7 558 75.1
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.1e-189 667.2 491 72.1
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 2.2e-185 652.9 491 70.7
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 7.9e-183 644.4 493 69.2
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.7e-182 641.0 491 68.6
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.1e-181 640.6 492 69.1
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.9e-181 639.8 483 69.8
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 4.3e-181 638.6 493 69.2
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 9.7e-181 637.5 489 69.5
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 6.3e-180 634.8 489 69.3
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.1e-179 634.0 491 69.7
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 9.0e-179 630.9 495 67.7
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.6e-175 619.0 492 67.1
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 3.6e-175 619.0 494 69.4
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 7.9e-175 617.8 493 68.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 5.1e-174 615.1 491 65.6
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.8e-172 609.4 489 65.4
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.8e-172 608.6 491 65.2
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 5.3e-171 605.1 528 63.4
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.9e-171 604.7 505 65.5
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.5e-170 603.6 507 65.1
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.4e-170 602.4 491 64.8
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 5.0e-169 598.6 490 66.3
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.1e-168 597.4 491 64.6
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.6e-165 586.3 493 63.9
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 9.7e-165 584.3 495 64.6
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-164 583.6 491 62.7
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.8e-164 582.0 461 66.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 8.2e-164 581.3 489 64.6
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.4e-163 579.7 490 62.4
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 4.1e-163 578.9 489 63.2
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.3e-163 578.6 490 62.4
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-162 577.4 481 63.0
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.9e-162 575.1 518 60.2
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.7e-162 574.7 490 63.9
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.0e-161 574.3 493 62.7
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-160 570.9 490 61.8
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 5.5e-160 568.5 491 62.1
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 5.5e-160 568.5 502 62.0
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.7e-159 566.2 504 61.7
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.6e-159 565.8 489 61.8
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.4e-158 563.9 541 58.6
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.4e-158 563.9 492 62.0
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.0e-158 562.8 521 58.9
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 6.7e-158 561.6 495 60.6
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 6.7e-158 561.6 496 62.1
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 6.7e-158 561.6 496 62.1
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 8.8e-158 561.2 491 63.1
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 8.8e-158 561.2 490 60.8
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.5e-157 560.5 487 60.6
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 7.4e-157 558.1 469 62.7
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 3.7e-156 555.8 491 62.9
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.7e-156 555.8 497 60.8
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 6.3e-156 555.1 477 62.1
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.1e-155 552.7 508 60.2
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.1e-155 552.4 490 61.0
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.0e-154 550.1 471 62.2
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 7.2e-152 541.6 498 59.8
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 9.4e-152 541.2 487 61.2
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.6e-151 539.3 491 60.5
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 8.0e-151 538.1 483 59.4
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.4e-150 537.3 483 59.2
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.8e-150 537.0 481 60.3
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 1.8e-150 537.0 501 58.1
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 5.2e-150 535.4 470 59.6
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.2e-149 534.3 499 59.7
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.5e-149 533.9 488 58.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 7.5e-149 531.6 498 60.2
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.2e-148 530.0 512 57.6
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.7e-148 529.3 492 60.0
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 8.3e-148 528.1 483 59.8
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.8e-147 526.9 494 58.7
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 2.4e-147 526.6 431 67.1
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 5.3e-147 525.4 493 58.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.3e-147 525.4 487 59.8
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.2e-146 524.2 470 59.1
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 5.9e-146 521.9 489 59.3
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.3e-145 520.8 462 61.0
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.2e-145 520.0 450 64.7
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 8.5e-145 518.1 491 58.9
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 4.2e-144 515.8 483 57.3
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 4.2e-144 515.8 464 61.0
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.2e-141 507.7 486 56.8
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 3.4e-141 506.1 493 57.6
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 9.8e-141 504.6 480 56.7
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.7e-140 503.8 617 48.8
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.4e-139 500.7 470 57.0
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 5.4e-139 498.8 439 62.0
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.6e-138 497.3 498 56.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.0e-138 496.9 496 55.8
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.7e-137 493.8 498 55.0
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 2.9e-137 493.0 487 57.3
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 8.6e-137 491.5 482 56.2
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.5e-136 490.0 521 53.4
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 5.5e-136 488.8 497 54.9
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 5.5e-136 488.8 478 56.5
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.4e-134 484.2 545 52.8
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.5e-133 480.7 481 55.9
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 9.8e-133 478.0 478 55.6
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.8e-133 478.0 518 52.9
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-132 477.6 518 52.9
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 4.9e-132 475.7 473 55.6
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 6.3e-132 475.3 478 55.0
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 6.3e-132 475.3 477 55.6
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.4e-131 473.4 478 55.4
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 5.4e-131 472.2 478 55.2
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.2e-130 471.1 483 54.0
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 4.5e-130 469.2 474 54.4
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.3e-129 466.8 429 56.6
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 8.6e-129 464.9 499 53.3
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-128 464.5 450 59.1
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.1e-128 464.5 488 54.5
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-126 458.0 470 53.6
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 4.0e-126 456.1 480 54.6
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.6e-125 453.4 489 54.4
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.6e-125 453.4 483 53.6
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.5e-125 451.8 418 59.1
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.4e-123 447.6 491 50.9
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 3.2e-123 446.4 486 51.4
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 4.1e-123 446.0 488 52.5
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-122 443.4 479 52.2
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 3.6e-119 433.0 476 50.8
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 8.0e-119 431.8 493 50.9
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 2.7e-114 416.8 500 49.4
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 7.3e-112 408.7 470 49.4
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 2.1e-111 407.1 499 50.5
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.7e-108 397.5 479 50.5
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.6e-103 380.9 425 53.6
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.1e-102 376.7 488 48.4
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 4.4e-101 372.9 470 45.7
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.1e-96 358.2 456 50.0
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 4.8e-95 352.8 439 47.4
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 9.0e-94 348.6 216 76.4
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 8.4e-92 342.0 216 74.5
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 7.1e-91 339.0 478 41.4
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.6e-90 336.3 402 51.0
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.9e-88 330.9 371 47.4
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 3.3e-88 330.1 476 43.7
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 2.0e-85 320.9 357 51.0
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.9e-84 317.0 349 49.6
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.1e-79 300.8 391 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 3.7e-79 300.1 290 51.4
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.8e-78 297.7 222 62.6
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 9.0e-70 268.9 176 73.9
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 2.2e-55 221.1 266 51.5
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.5e-52 209.1 156 68.6
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 5.5e-51 206.5 301 44.2
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.3e-49 201.1 133 69.2
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 3.8e-44 183.7 369 33.3
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.1e-40 172.2 247 35.6
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 3.7e-39 167.2 285 39.3
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 4.4e-32 143.7 190 36.8
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 9.8e-32 142.5 95 68.4
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.6e-29 135.2 226 42.5
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.7e-23 115.2 76 65.8
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.1e-22 112.5 70 71.4
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.8e-22 111.7 104 65.4
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 2.0e-16 91.7 230 27.8
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 9.8e-16 89.4 90 56.7
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.9e-15 87.8 51 72.5
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 4.6e-13 80.5 43 90.7
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.1e-09 67.8 69 55.1
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 4.0e-09 67.4 55 58.2
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 1.2e-08 65.9 108 34.3
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 5.8e-08 63.5 117 42.7


User provided reference genes

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